CeDR Atlas: a knowledgebase of cellular drug response.Wang YY, Kang H, Xu T, Hao L, Bao Y, Jia P. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34634794 DOI: 10.1093/nar/gkab897 |
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scMethBank: a database for single-cell whole genome DNA methylation maps.Zong W, Kang H, Xiong Z, Ma Y, Jin T, Gong Z, Yi L, Zhang M, Wu S, Wang G, Bao Y, Li R. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34570235 DOI: 10.1093/nar/gkab833 |
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EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study.Xiong Z, Yang F, Li M, Ma Y, Zhao W, Wang G, Li Z, Zheng X, Zou D, Zong W, Kang H, Jia Y, Li R, Zhang Z, Bao Y. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34718752 DOI: 10.1093/nar/gkab972 |
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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022.CNCB-NGDC Members and Partners. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34718731 DOI: 10.1093/nar/gkab951 |
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CancerSCEM: a database of single-cell expression map across various human cancers.Zeng J, Zhang Y, Shang Y, Mai J, Shi S, Lu M, Bu C, Zhang Z, Zhang Z, Li Y, Du Z, Xiao J. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34643725 DOI: 10.1093/nar/gkab905 |
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Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels.Zhang Y, Zou D, Zhu T, Xu T, Chen M, Niu G, Zong W, Pan R, Jing W, Sang J, Liu C, Xiong Y, Sun Y, Zhai S, Chen H, Zhao W, Xiao J, Bao Y, Hao L, Zhang Z. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34591957 DOI: 10.1093/nar/gkab878 |
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BrainBase: a curated knowledgebase for brain diseases.Liu L, Zhang Y, Niu G, Li Q, Li Z, Zhu T, Feng C, Liu X, Zhang Y, Xu T, Chen R, Teng X, Zhang R, Zou D, Ma L, Zhang Z. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34718720 DOI: 10.1093/nar/gkab987 |
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CompoDynamics: a comprehensive database for characterizing sequence composition dynamics.Jiang S, Du Q, Feng C, Ma L, Zhang Z. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34718745 DOI: 10.1093/nar/gkab979 |
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LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system.Liu L, Li Z, Liu C, Zou D, Li Q, Feng C, Jing W, Luo S, Zhang Z, Ma L. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34751395 DOI: 10.1093/nar/gkab998 |
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Regeneration Roadmap: database resources for regenerative biology.Kang W, Jin T, Zhang T, Ma S, Yan H, Liu Z, Ji Z, Cai Y, Wang S, Song M, Ren J, Hu B, Zhou Q, Zhang W, Qu J, Bao Y, Liu GH. Nucleic acids research, Volume 50, Issue D1, 2022 PMID: 34591960 DOI: 10.1093/nar/gkab870 |
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Genome Warehouse: A Public Repository Housing Genome-scale Data.Chen M, Ma Y, Wu S, Zheng X, Kang H, Sang J, Xu X, Hao L, Li Z, Gong Z, Xiao J, Zhang Z, Zhao W, Bao Y. Genomics, proteomics & bioinformatics, Volume , Issue , 2021 PMID: 34175476 DOI: 10.1016/j.gpb.2021.04.001 |
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Aging Atlas: a multi-omics database for aging biology.Aging Atlas Consortium. Nucleic acids research, Volume 49, Issue D1, 2021 PMID: 33119753 DOI: 10.1093/nar/gkaa894 |
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LncExpDB: an expression database of human long non-coding RNAs.Li Z, Liu L, Jiang S, Li Q, Feng C, Du Q, Zou D, Xiao J, Zhang Z, Ma L. Nucleic acids research, Volume 49, Issue D1, 2021 PMID: 33045751 DOI: 10.1093/nar/gkaa850 |
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Genome Variation Map: a worldwide collection of genome variations across multiple species.Li C, Tian D, Tang B, Liu X, Teng X, Zhao W, Zhang Z, Song S. Nucleic acids research, Volume 49, Issue D1, 2021 PMID: 33170268 DOI: 10.1093/nar/gkaa1005 |
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Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.CNCB-NGDC Members and Partners. Nucleic acids research, Volume 49, Issue D1, 2021 PMID: 33175170 DOI: 10.1093/nar/gkaa1022 |
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SorGSD: updating and expanding the sorghum genome science database with new contents and tools.Liu Y, Wang Z, Wu X, Zhu J, Luo H, Tian D, Li C, Luo J, Zhao W, Hao H, Jing HC. Biotechnology for biofuels, Volume 14, Issue 1, 2021 PMID: 34344425 DOI: 10.1186/s13068-021-02016-7 |
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Molecular evolutionary analysis of human primary microcephaly genes.Pervaiz N, Kang H, Bao Y, Abbasi AA. BMC ecology and evolution, Volume 21, Issue 1, 2021 PMID: 33941077 DOI: 10.1186/s12862-021-01801-0 |
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RefRGim: an intelligent reference panel reconstruction method for genotype imputation with convolutional neural networks.Shi S, Qian Q, Yu S, Wang Q, Wang J, Zeng J, Du Z, Xiao J. Briefings in bioinformatics, Volume 22, Issue 6, 2021 PMID: 34402866 DOI: 10.1093/bib/bbab326 |
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iSheep: an Integrated Resource for Sheep Genome, Variant and Phenotype.Wang ZH, Zhu QH, Li X, Zhu JW, Tian DM, Zhang SS, Kang HL, Li CP, Dong LL, Zhao WM, Li MH. Frontiers in genetics, Volume 12, Issue , 2021 PMID: 34490043 DOI: 10.3389/fgene.2021.714852 |
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Comprehensive Analysis of Expression Regulation for RNA m6A Regulators With Clinical Significance in Human Cancers.Liu X, Wang P, Teng X, Zhang Z, Song S. Frontiers in oncology, Volume 11, Issue , 2021 PMID: 33718187 DOI: 10.3389/fonc.2021.624395 |
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The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types.Chen T, Chen X, Zhang S, Zhu J, Tang B, Wang A, Dong L, Zhang Z, Yu C, Sun Y, Chi L, Chen H, Zhai S, Sun Y, Lan L, Zhang X, Xiao J, Bao Y, Wang Y, Zhang Z, Zhao W. Genomics, proteomics & bioinformatics, Volume , Issue , 2021 PMID: 34400360 DOI: 10.1016/j.gpb.2021.08.001 |
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Genomic Epidemiology of SARS-CoV-2 in Pakistan.Song S, Li C, Kang L, Tian D, Badar N, Ma W, Zhao S, Jiang X, Wang C, Sun Y, Li W, Lei M, Li S, Qi Q, Ikram A, Salman M, Umair M, Shireen H, Batool F, Zhang B, Chen H, Yang Y, Ali Abbasi A, Li M, Xue Y, Bao Y. Genomics, proteomics & bioinformatics, Volume , Issue , 2021 PMID: 34695600 DOI: 10.1016/j.gpb.2021.08.007 |
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GSA-Human: Genome Sequence Archive for Human.Zhang SS, Chen X, Chen TT, Zhu JW, Tang BX, Wang AK, Dong LL, Zhang ZW, Sun YL, Yu CX, Zhai S, Sun YB, Chen HX, Du ZL, Xiao JF, Zhang Z, Bao YM, Wang YQ, Zhao WM. Yi chuan = Hereditas, Volume 43, Issue 10, 2021 PMID: 34702711 DOI: 10.16288/j.yczz.21-248 |
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Metagenomic analysis of relative abundance and diversity of bacterial microbiota in Bemisia tabaci infesting cotton crop in Pakistan.Shah SHJ, Malik AH, Zhang B, Bao Y, Qazi J. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, Volume 84, Issue , 2020 PMID: 32470630 DOI: 10.1016/j.meegid.2020.104381 |
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IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data.Sang J, Zou D, Wang Z, Wang F, Zhang Y, Xia L, Li Z, Ma L, Li M, Xu B, Liu X, Wu S, Liu L, Niu G, Li M, Luo Y, Hu S, Hao L, Zhang Z. Genomics, proteomics & bioinformatics, Volume 18, Issue 2, 2020 PMID: 32683045 DOI: 10.1016/j.gpb.2018.12.011 |
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Mapping regulatory variants controlling gene expression in drought response and tolerance in maize.Liu S, Li C, Wang H, Wang S, Yang S, Liu X, Yan J, Li B, Beatty M, Zastrow-Hayes G, Song S, Qin F. Genome biology, Volume 21, Issue 1, 2020 PMID: 32631406 DOI: 10.1186/s13059-020-02069-1 |
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Molecular evolutionary and structural analysis of human UCHL1 gene demonstrates the relevant role of intragenic epistasis in Parkinson's disease and other neurological disorders.Nawaz MS, Asghar R, Pervaiz N, Ali S, Hussain I, Xing P, Bao Y, Abbasi AA. BMC evolutionary biology, Volume 20, Issue 1, 2020 PMID: 33028204 DOI: 10.1186/s12862-020-01684-7 |
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The 2019 novel coronavirus resource.Zhao WM, Song SH, Chen ML, Zou D, Ma LN, Ma YK, Li RJ, Hao LL, Li CP, Tian DM, Tang BX, Wang YQ, Zhu JW, Chen HX, Zhang Z, Xue YB, Bao YM. Yi chuan = Hereditas, Volume 42, Issue 2, 2020 PMID: 32102777 DOI: 10.16288/j.yczz.20-030 |
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The Elements of Data Sharing.Zhang Z, Song S, Yu J, Zhao W, Xiao J, Bao Y. Genomics, proteomics & bioinformatics, Volume 18, Issue 1, 2020 PMID: 32360769 DOI: 10.1016/j.gpb.2020.04.001 |
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SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice.Yan J, Zou D, Li C, Zhang Z, Song S, Wang X. Genomics, proteomics & bioinformatics, Volume 18, Issue 2, 2020 PMID: 32619768 DOI: 10.1016/j.gpb.2020.03.002 |
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Multi-omics annotation of human long non-coding RNAs.Li Q, Li Z, Feng C, Jiang S, Zhang Z, Ma L. Biochemical Society transactions, Volume 48, Issue 4, 2020 PMID: 32756901 DOI: 10.1042/bst20191063 |
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An online coronavirus analysis platform from the National Genomics Data Center.Gong Z, Zhu JW, Li CP, Jiang S, Ma LN, Tang BX, Zou D, Chen ML, Sun YB, Song SH, Zhang Z, Xiao JF, Xue YB, Bao YM, Du ZL, Zhao WM. Zoological research, Volume 41, Issue 6, 2020 PMID: 33045776 DOI: 10.24272/j.issn.2095-8137.2020.065 |
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Database Resources of the National Genomics Data Center in 2020.National Genomics Data Center Members and Partners. Nucleic acids research, Volume 48, Issue D1, 2020 PMID: 31702008 DOI: 10.1093/nar/gkz913 |
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PADS Arsenal: a database of prokaryotic defense systems related genes.Zhang Y, Zhang Z, Zhang H, Zhao Y, Zhang Z, Xiao J. Nucleic acids research, Volume 48, Issue D1, 2020 PMID: 31620779 DOI: 10.1093/nar/gkz916 |
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LSD 3.0: a comprehensive resource for the leaf senescence research community.Li Z, Zhang Y, Zou D, Zhao Y, Wang HL, Zhang Y, Xia X, Luo J, Guo H, Zhang Z. Nucleic acids research, Volume 48, Issue D1, 2020 PMID: 31599330 DOI: 10.1093/nar/gkz898 |
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EWAS Data Hub: a resource of DNA methylation array data and metadata.Xiong Z, Li M, Yang F, Ma Y, Sang J, Li R, Li Z, Zhang Z, Bao Y. Nucleic acids research, Volume 48, Issue D1, 2020 PMID: 31584095 DOI: 10.1093/nar/gkz840 |
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GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals.Tian D, Wang P, Tang B, Teng X, Li C, Liu X, Zou D, Song S, Zhang Z. Nucleic acids research, Volume 48, Issue D1, 2020 PMID: 31566222 DOI: 10.1093/nar/gkz828 |
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Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling.Liu L, Wang G, Wang L, Yu C, Li M, Song S, Hao L, Ma L, Zhang Z. Biology direct, Volume 15, Issue 1, 2020 PMID: 32539851 DOI: 10.1186/s13062-020-00264-5 |
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iDog: an integrated resource for domestic dogs and wild canids.Tang B, Zhou Q, Dong L, Li W, Zhang X, Lan L, Zhai S, Xiao J, Zhang Z, Bao Y, Zhang YP, Wang GD, Zhao W. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30371881 DOI: 10.1093/nar/gky1041 |
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Taxonomy of the order Mononegavirales: update 2019.Amarasinghe GK, Ayllón MA, Bào Y, Basler CF, Bavari S, Blasdell KR, Briese T, Brown PA, Bukreyev A, Balkema-Buschmann A, Buchholz UJ, Chabi-Jesus C, Chandran K, Chiapponi C, Crozier I, de Swart RL, Dietzgen RG, Dolnik O, Drexler JF, Dürrwald R, Dundon WG, Duprex WP, Dye JM, Easton AJ, Fooks AR, Formenty PBH, Fouchier RAM, Freitas-Astúa J, Griffiths A, Hewson R, Horie M, Hyndman TH, Jiāng D, Kitajima EW, Kobinger GP, Kondō H, Kurath G, Kuzmin IV, Lamb RA, Lavazza A, Lee B, Lelli D, Leroy EM, Lǐ J, Maes P, Marzano SL, Moreno A, Mühlberger E, Netesov SV, Nowotny N, Nylund A, Økland AL, Palacios G, Pályi B, Pawęska JT, Payne SL, Prosperi A, Ramos-González PL, Rima BK, Rota P, Rubbenstroth D, Shī M, Simmonds P, Smither SJ, Sozzi E, Spann K, Stenglein MD, Stone DM, Takada A, Tesh RB, Tomonaga K, Tordo N, Towner JS, van den Hoogen B, Vasilakis N, Wahl V, Walker PJ, Wang LF, Whitfield AE, Williams JV, Zerbini FM, Zhāng T, Zhang YZ, Kuhn JH. Archives of virology, Volume 164, Issue 7, 2019 PMID: 31089958 DOI: 10.1007/s00705-019-04247-4 |
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Plant editosome database: a curated database of RNA editosome in plants.Li M, Xia L, Zhang Y, Niu G, Li M, Wang P, Zhang Y, Sang J, Zou D, Hu S, Hao L, Zhang Z. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30364952 DOI: 10.1093/nar/gky1026 |
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EWAS Atlas: a curated knowledgebase of epigenome-wide association studies.Li M, Zou D, Li Z, Gao R, Sang J, Zhang Y, Li R, Xia L, Zhang T, Niu G, Bao Y, Zhang Z. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30364969 DOI: 10.1093/nar/gky1027 |
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Database Resources of the BIG Data Center in 2019.BIG Data Center Members. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30365034 DOI: 10.1093/nar/gky993 |
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Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human.Niu G, Zou D, Li M, Zhang Y, Sang J, Xia L, Li M, Liu L, Cao J, Zhang Y, Wang P, Hu S, Hao L, Zhang Z. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30357418 DOI: 10.1093/nar/gky958 |
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NucMap: a database of genome-wide nucleosome positioning map across species.Zhao Y, Wang J, Liang F, Liu Y, Wang Q, Zhang H, Jiang M, Zhang Z, Zhao W, Bao Y, Zhang Z, Wu J, Asmann YW, Li R, Xiao J. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30335176 DOI: 10.1093/nar/gky980 |
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LncBook: a curated knowledgebase of human long non-coding RNAs.Ma L, Cao J, Liu L, Du Q, Li Z, Zou D, Bajic VB, Zhang Z. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30329098 DOI: 10.1093/nar/gky960 |
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RNAcentral: a hub of information for non-coding RNA sequences.The RNAcentral Consortium. Nucleic acids research, Volume 47, Issue D1, 2019 PMID: 30395267 DOI: 10.1093/nar/gky1034 |
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Characterization of Proteome Variation During Modern Maize Breeding.Jiang LG, Li B, Liu SX, Wang HW, Li CP, Song SH, Beatty M, Zastrow-Hayes G, Yang XH, Qin F, He Y. Molecular & cellular proteomics : MCP, Volume 18, Issue 2, 2019 PMID: 30409858 DOI: 10.1074/mcp.ra118.001021 |
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Characterization and identification of long non-coding RNAs based on feature relationship.Wang G, Yin H, Li B, Yu C, Wang F, Xu X, Cao J, Bao Y, Wang L, Abbasi AA, Bajic VB, Ma L, Zhang Z. Bioinformatics (Oxford, England), Volume 35, Issue 17, 2019 PMID: 30649200 DOI: 10.1093/bioinformatics/btz008 |
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Database Resources in BIG Data Center: Submission, Archiving, and Integration of Big Data in Plant Science.Song S, Zhang Z. Molecular plant, Volume 12, Issue 3, 2019 PMID: 30716410 DOI: 10.1016/j.molp.2019.01.020 |
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Molecular evolutionary and structural analysis of familial exudative vitreoretinopathy associated FZD4 gene.Seemab S, Pervaiz N, Zehra R, Anwar S, Bao Y, Abbasi AA. BMC evolutionary biology, Volume 19, Issue 1, 2019 PMID: 30849938 DOI: 10.1186/s12862-019-1400-9 |
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Community Curation and Expert Curation of Human Long Noncoding RNAs with LncRNAWiki and LncBook.Ma L, Cao J, Liu L, Li Z, Shireen H, Pervaiz N, Batool F, Raza RZ, Zou D, Bao Y, Abbasi AA, Zhang Z. Current protocols in bioinformatics, Volume 67, Issue 1, 2019 PMID: 31524988 DOI: 10.1002/cpbi.82 |
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Evolutionary history of the human multigene families reveals widespread gene duplications throughout the history of animals.Pervaiz N, Shakeel N, Qasim A, Zehra R, Anwar S, Rana N, Xue Y, Zhang Z, Bao Y, Abbasi AA. BMC evolutionary biology, Volume 19, Issue 1, 2019 PMID: 31221090 DOI: 10.1186/s12862-019-1441-0 |
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Computational determination of gene age and characterization of evolutionary dynamics in human.Yin H, Li M, Xia L, He C, Zhang Z. Briefings in bioinformatics, Volume 20, Issue 6, 2019 PMID: 30184145 DOI: 10.1093/bib/bby074 |