LGC Characterization and identification of long non-coding RNAs based on feature relationship
Introduction
LGC characterizes and identifies lncRNAs based on the relationship between ORF (open reading frame) Length and GC content. LGC is able to accurately distinguish lncRNAs from protein-coding RNAs in a cross-species manner without species-specific adjustments, and is robustly effective (>90% accuracy) in discriminating lncRNAs from protein-coding RNAs across diverse species that range from plants to mammals.
A web server for online identification of lncRNAs is publicly available at http://bigd.big.ac.cn/lgc/calculator.
Publications
Characterization And Identification Of Long Non Coding Rn As Based On Feature Relationship.
Cite this
Credits
- Lina Ma malina@big.ac.cn Developer
BIGD, Beijing Institute of Genomics, Chinese Academy of Sciences, China
- Zhang Zhang zhangzhang@big.ac.cn Developer
BIG Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences, China
- Guangyu Wang gwang2@houstonmethodist.org Developer
The Methodist Hospital Research Institute, The Methodist Hospital Research Institute, China
Community Ratings
| Usability | Efficiency | Reliability | Rated By |
|---|---|---|---|
| 3 users | |||
| Sign in to rate | |||
| dot***g@gmail.com (July 12, 2017) | |||
| wan***n@big.ac.cn (January 9, 2018) | |||
| zha***i@sysucc.org.cn (January 15, 2020) | |||
| Accession | BT000004 |
|---|---|
| Tool Type | Toolkit |
| Category | Protein-coding gene prediction |
| Platforms | Linux/Unix |
| Technologies | Java, Python2 |
| User Interface | Terminal Command Line, Webpage |
| Input Data | FASTA |
| Latest Release | 1.0 (June 26, 2017) |
| Download Count | 5178 |
| Submitted By | Lina Ma |