Introduction

We describe the software, STEM (STrategic Extractor for Mascot's results), which efficiently processes large-scale mass spectrometry-based proteomics data. V (View)-mode evaluates the Mascot peptide identification dataset, removes unreliable candidates and redundant assignments, and integrates the results with key information in the experiment. C (Comparison)-mode compares peptide coverage among multiple datasets and displays proteins commonly/specifically found therein, and processes data for quantitative studies that utilize conventional isotope tags or tags having a smaller mass difference. STEM significantly improves throughput of proteomics study.

Publications

  1. STEM: a software tool for large-scale proteomic data analyses.
    Cite this
    Shinkawa T, Taoka M, Yamauchi Y, Ichimura T, Kaji H, Takahashi N, Isobe T, 2005-09-01 - Journal of proteome research

Credits

  1. Takashi Shinkawa
    Developer

  2. Masato Taoka
    Developer

  3. Yoshio Yamauchi
    Developer

  4. Tohru Ichimura
    Developer

  5. Hiroyuki Kaji
    Developer

  6. Nobuhiro Takahashi
    Developer

  7. Toshiaki Isobe
    Investigator

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Summary
AccessionBT000869
Tool TypeApplication
Category
PlatformsWindows
Technologies
User InterfaceTerminal Command Line
Download Count0
Submitted ByToshiaki Isobe