CandiHap A haplotype analysis toolkit for natural variation study
Introduction
CandiHap allows fast and robust haplotype analyses and candidate identification preselection of candidate causal variations from sequencing data. Investigators can use CandiHap to specify a gene or linkage sites based on GWAS and explore favourable haplotypes of candidate genes for target traits. CandiHap can be run on Windows or UNIX platforms in graphical user interface or command lines, and applied to any species of plant, animal and microbial.
Publications
Credits
- Xukai Li xukai_li@sxau.edu.cn Investigator
College of Sciences, Shanxi Agricultural University, China
Community Ratings
Usability | Efficiency | Reliability | Rated By |
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2 users | |||
Sign in to rate | |||
xuk***i@sxau.edu.cn (June 9, 2020) | |||
xuk***i@qq.com (August 18, 2021) |
Accession | BT007080 |
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Tool Type | Toolkit |
Category | Variant effect prediction |
Platforms | Linux/Unix, MAC OS X, Windows |
Technologies | Perl, Python2, R |
User Interface | Desktop GUI, Terminal Command Line |
Input Data | VCF |
Latest Release | V1.2.0 (June 9, 2020) |
Download Count | 24044 |
Country/Region | China |
Submitted By | Xukai Li |
This work was funded by the Youth Fund Project on Application of Basic Research Project of Shanxi Province (201901D211362), the Scientific and Technological Innovation Programs of Shanxi Agricultural University (2017YJ27 and 2018YJ31), Graduate Education Innovation Project of Shanxi Province (2019SY228), and Shanxi Key R&D Program (201703D211008).