STRsensor Short Tandem Repeats (STR) Detection

Introduction

STRsensor (v1.2.0) is a method that can achieve high performance in both whole genome sequencing (WGS) data and multiplex deep sequencing data in STR allele-typing. The benchmark shows that STRsensor can obtain 99.64% detection ratio and 99.9% accuracy in 687 multiplex deep sequencing samples, while 100% detection ratio and 99.37% accuracy in a simulated 30 low-coverage WGS data.

Publications

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Credits

  1. xiaolong zhang zhangxiaolong@big.ac.cn
    Developer

    Precision medicine laboratory, Beijing Institute of Genomics, Chinese Academy of Sciences, China

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Summary
AccessionBT007090
Tool TypeApplication
CategoryOther tools
PlatformsLinux/Unix
TechnologiesC
User InterfaceTerminal Command Line
Input DataBAM
Latest Releasev1.2.0 (December 5, 2020)
Download Count4062
Submitted Byxiaolong zhang