CIRIquant Comprehensive toolkit for circRNA quantification and differential expression analysis

Introduction

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

Documentation

Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest/

Author

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

Release Notes

  • Version 1.1: Added support for stranded library and GFF3 format input.
  • Version 1.0: The first released version of CIRIquant.

License

The code is released under the MIT License. See the LICENSE file for more detail.

Citing CIRIquant

  • Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9

Publications

  1. Accurate quantification of circular RNAs identifies extensive circular isoform switching events
    Cite this
    Jinyang Zhang, Shuai Chen, Jingwen Yang, Fangqing Zhao, 2020/1/3 - Nature Communications
    Cited by 32 (Google Schoolar as of June 5, 2021)

Credits

  1. Jinyang Zhang zhangjinyang@biols.ac.cn
    Developer

    Computational Genomics Lab, Beijing Institutes of Life Sciences, China

  2. Fangqing Zhao zhfq@biols.ac.cn
    Investigator

    Computational Genomics Lab, Beijing Institutes of Life Sciences, China

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Summary
AccessionBT007164
Tool TypeToolkit
CategoryCircular RNA detection
PlatformsLinux/Unix
TechnologiesPython2
User InterfaceTerminal Command Line
Input DataFASTQ
Latest Releasev1.1.2 (May 31, 2021)
Download Count3129
Country/RegionChina
Submitted ByJinyang Zhang
Fundings

2018YFC0910400