CIRIquant Comprehensive toolkit for circRNA quantification and differential expression analysis
Introduction
CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
Documentation
Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest/
Author
Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)
Maintainer: Jinyang Zhang
Release Notes
- Version 1.1: Added support for stranded library and GFF3 format input.
- Version 1.0: The first released version of CIRIquant.
License
The code is released under the MIT License. See the LICENSE
file for more detail.
Citing CIRIquant
- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9
Publications
Accurate quantification of circular RNAs identifies extensive circular isoform switching events
Cite thisCited by 32 (Google Schoolar as of June 5, 2021)
Credits
- Jinyang Zhang zhangjinyang@biols.ac.cn Developer
Computational Genomics Lab, Beijing Institutes of Life Sciences, China
- Fangqing Zhao zhfq@biols.ac.cn Investigator
Computational Genomics Lab, Beijing Institutes of Life Sciences, China
Community Ratings
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Summary
Accession | BT007164 |
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Tool Type | Toolkit |
Category | Circular RNA detection |
Platforms | Linux/Unix |
Technologies | Python2 |
User Interface | Terminal Command Line |
Input Data | FASTQ |
Latest Release | v1.1.2 (May 31, 2021) |
Download Count | 3129 |
Country/Region | China |
Submitted By | Jinyang Zhang |
Fundings
2018YFC0910400