CIRI-long circular RNA identifier using long-read sequencing data
Introduction
Circular RNA Identification for Long-Reads Nanopore Sequencing Data
Documentation
Documentation is available online at https://ciri-cookbook.readthedocs.io/en/latest
Author
Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)
Maintainer: Jinyang Zhang
Release Notes
- version 1.0.2: Add fast mode for ccs detection and option for user-provided circRNA annotation
- version 1.0.1: Fixed bug
- version 1.0: First released version
License
The code is released under the MIT License. See the LICENSE
file for more detail
Citing CIRI-long
Zhang, J., Hou, L., Zuo, Z., Ji, P., Zhang, X., Xue, Y., & Zhao, F. (2021). Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long. Nature Biotechnology. https://doi.org/10.1038/s41587-021-00842-6
Publications
Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long
Cite thisCited by 3 (Google Schoolar as of June 5, 2021)
Credits
- Jinyang Zhang zhangjinyang@biols.ac.cn Developer
Computational Genomics Lab, Beijing Institutes of Life Sciences, China
- Fangqing Zhao zhfq@biols.ac.cn Investigator
Computational Genomics Lab, Beijing Institutes of Life Sciences, China
Community Ratings
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Summary
Accession | BT007165 |
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Tool Type | Toolkit |
Category | Circular RNA detection |
Platforms | Linux/Unix |
Technologies | Python3 |
User Interface | Terminal Command Line |
Input Data | FASTQ |
Latest Release | v1.0.2 (May 31, 2021) |
Download Count | 3160 |
Country/Region | China |
Submitted By | Jinyang Zhang |
Fundings
2018YFC0910400