McAN a fast minimum-cost arborescence based haplotype network construction algorithm

Introduction

McAN is a tool for haplotype network construction for sequences. The web service of McAN will be found here https://ngdc.cncb.ac.cn/ncov/online/tool/haplotype. The haplotype network of SARS-CoV-2 constructed by McAN will be found here https://ngdc.cncb.ac.cn/ncov/haplotype/.

Publications

  1. McAN: an ultrafast haplotype network construction algorithm
    Lun Li, Bo Xu, Dongmei Tian, Cuiping Li, Na Li, Anke Wang, Junwei Zhu, Yongbiao Xue, Zhang Zhang, Yiming Bao, Wenming Zhao, Shuhui Song, - bioRxiv

Credits

  1. Lun Li lil@big.ac.cn
    InvestigatorDeveloper

    NGDC, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation, China

  2. Bo Xu xubo123@big.ac.cn
    InvestigatorDeveloper

    NGDC, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation, China

Community Ratings

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lil***l@big.ac.cn (February 24, 2023)
Summary
AccessionBT007301
Tool TypeApplication
CategoryHaplotype network construction
PlatformsLinux/Unix
TechnologiesC, C++
User InterfaceTerminal Command Line
Input DataVCF
Latest ReleaseV1.4.1 (April 19, 2022)
Download Count6338
Country/RegionChina
Submitted ByLun Li
Fundings

This research was funded by grants from the National Key Research & Development Program of China (2021YFF0703703, 2021YFC0863300 to S.H.S.), the Strategic Priority Research Program of the Chinese Academy of Sciences (XDB38060100 to Y.M.B.), the National Natural Science Foundation of China (32170678 to W.M. Z.), Youth Innovation Promotion Association of CAS (2017141 to S.H.S.), the Beijing Nova Program (Z211100002121006 to L.L.).