McAN a fast minimum-cost arborescence based haplotype network construction algorithm

Introduction

McAN is a tool for haplotype network construction for sequences. The web service of McAN will be found here https://ngdc.cncb.ac.cn/ncov/online/tool/haplotype. The haplotype network of SARS-CoV-2 constructed by McAN will be found here https://ngdc.cncb.ac.cn/ncov/haplotype/.

Publications

  1. McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks
    Cite this
    Lun Li, Bo Xu, Dongmei Tian, Anke Wang, Junwei Zhu, Cuiping Li, Na Li, Wei Zhao, Leisheng Shi, Yongbiao Xue, Zhang Zhang, Yiming Bao, Wenming Zhao, Shuhui Song, - Briefings in Bioinformatics

Credits

  1. Lun Li lil@big.ac.cn
    InvestigatorDeveloper

    NGDC, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation, China

  2. Bo Xu xubo123@big.ac.cn
    InvestigatorDeveloper

    NGDC, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation, China

Community Ratings

UsabilityEfficiencyReliabilityRated By
2 users
Sign in to rate
lil***l@big.ac.cn (February 24, 2023)
zha***s@big.ac.cn (May 22, 2023)
Summary
AccessionBT007301
Tool TypeApplication
CategoryHaplotype network construction
PlatformsLinux/Unix
TechnologiesC, C++
User InterfaceTerminal Command Line, Webpage
Input DataVCF
Latest ReleaseSupplementaryDatasetV0.0 (April 19, 2022)
Download Count7440
Country/RegionChina
Submitted ByLun Li
Fundings

2021YFF0703703, 2021YFC0863300, ANSO-CR-KP-2022-09, XDB38030200, 32270718, 32170678, 2017141, Z211100002121006