PanGraphViewer Show panenome graphs in an easy way

Introduction

PanGraphviewer is a tool to help visualize pangenome graphs built from assemblies or variants. It accepts rGFA, GFA_v1 and VCF formats

Publications

  1. PanGraphViewer: A Versatile Tool to Visualize Pangenome Graphs
    Cite this
    Yuxuan Yuan, Ricky Ka-Kui Ma and Ting-Fung Chan, -

Credits

  1. Yuxuan Yuan yuxuan.yuan@outlook.com
    Developer

    School of Life Sciences, The Chinese University of Hong Kong, China

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Summary
AccessionBT007328
Tool TypeApplication
CategoryVariant visualization, Assembly visualization
PlatformsLinux/Unix, MAC OS X, Windows
TechnologiesPython3
User InterfaceDesktop GUI, Webpage
Input DataFASTA, VCF
Latest Releasev1.02 (September 17, 2022)
Download Count980
Submitted ByYuxuan Yuan
Fundings

Hong Kong Research Grants Council Area of Excellence Scheme (AoE/M-403/16), Collaborative Research Fund (C4057-18EF) and the Innovation and Technology Commission, Hong Kong Special Administrative Region Government to the State Key Laboratory of Agrobiotechnology (CUHK)