GSA_STAT_reads_classification Using STAT in GSA database for short reads classification

Introduction

This package is the pipeline using STAT tools for GSA database to analyze the raw sequence of short reads. We build the local K-mer database which uses Refseq(2023-03 217) and Taxonomy (20230315) . We also revise the script to show the real statistics percentage of "unidentified reads", input of .fastq.gz format file, and optimized the steps of matching species information from hits information.

Publications

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Credits

  1. Tianhao Huang huangth@big.ac.cn
    Investigator

    National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation, China

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Summary
AccessionBT007358
Tool TypeApplication
CategoryUnclassified tools
PlatformsLinux/Unix
TechnologiesBASH, C++, Python3
User InterfaceTerminal Command Line
Input DataFASTA, FASTQ
Latest Release1.0 (May 26, 2023)
Download Count223
Country/RegionChina
Submitted ByTianhao Huang
Fundings

XDB38050300; 2023YFC2605700