bam2vcf Variant identification based on bam file for pathogenic bacteria
Introduction
The Perl script bam2vcf detects variants using a bam file with strict filtering conditions to minimize the impact of contamination and coinfection Comparing with WGS, DAS has unique data processing steps, including filtering sequencing data based on primer sequences and disabling fragment length filter.
Publications
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Credits
- Wanfei Liu liuwanfei@caas.cn Developer
The Omics Technology Research Center, Agricultural Genome Research Institute, Chinese Academy of Agricultural Sciences, China
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Summary
Accession | BT007389 |
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Tool Type | Pipeline & Protocol |
Category | Variant detection |
Platforms | Linux/Unix, Windows |
Technologies | Perl |
User Interface | Terminal Command Line |
Input Data | BAM |
Latest Release | 1.1 (December 18, 2023) |
Download Count | 1640 |
Submitted By | Wanfei Liu |