piplineForQC_v2.pl A toolkit for short reads filtering

Introduction

Usage: piplineForQC.pl Command

Command:

adapter => Remove apapter sequence.
quality => Remove low base quality reads.
duplication => Remove duplication reads.
adp_dup => Remove adapter and duplication reads.
adp_qual => Remove adapter and filter low base quality reads.
all => Remove adapter, filter low base quality and remove duplication reads.

Publications

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Credits

  1. Meiye JIANG jiangmy@big.ac.cn
    Investigator

    BIGD, Beijing Institute of Genomics, Chinese Academy of Sciences, China

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Summary
AccessionBT007415
Tool TypeToolkit
CategoryRead quality control, Error correction, Adapter trimming
PlatformsLinux/Unix
TechnologiesPerl
User InterfaceTerminal Command Line
Input DataFASTQ
Latest Release2.0 (February 18, 2024)
Download Count265
Country/RegionChina
Submitted ByMeiye JIANG