| Accession | PRJCA001158 | ||||||||||||||||||||
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| Title | sequence of tea plant | ||||||||||||||||||||
| Relevance | Agricultural | ||||||||||||||||||||
| Data types |
Whole genome sequencing
Transcriptome or Gene expression Genome sequencing and assembly Raw sequence reads Genome sequencing |
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| Organisms |
Camellia
Camellia sinensis var. assamica Camellia sasanqua Camellia sinensis var. pubilimba Camellia sinensis var. sinensis Camellia atrothea Camellia gymnogyna Camellia crassicolumna Camellia taliensis |
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| Description | Here we sequenced and assembled a high quality tea plant (longjing43) and resequenced 139 diverse tea collected from around the world. These included 93 in China ,1 in Burma, 6 in Georgia,5 in Hawaii,1 in India,12 in Japan,7 in Kenya,5 in Laos,5 in Nepal,1 in Sri Lanka and 3 in Vietnam. Genomic DNA was extracted and sequenced to a average depth of 13.6X per individual. The whole genome and population genomic analyses using these data provided insights into the origin and differentiation of the tea | ||||||||||||||||||||
| Sample scope | Multiisolate | ||||||||||||||||||||
| Release date | 2018-12-13 | ||||||||||||||||||||
| Publication |
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| Biomaterial provider | Tea Research Institute, Chinese Academy of Agricultural Sciences | ||||||||||||||||||||
| Grants |
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| Submitter | alun li (lialun@caas.cn) | ||||||||||||||||||||
| Organization | Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences | ||||||||||||||||||||
| Submission date | 2018-12-07 |