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CRA001279 Information
Title: Whole genome sequencing of Longjing43 and population resequencing of the tea plants
BioProject: PRJCA001158 /
Release date: 2020-08-17
Files: 607
File size: 4923.94 GB
Publication
Journal name
Nature Communications
Year
2020
DOI
10.1038/s41467-020-18228-8
PubMed ID
32895382

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX091219 CsLJ43_pb_B1 Camellia sinensis var. sinensis PacBio RS II SAMC050981
Run accession Run alias Run data file information
CRR115389 CA000-PB-01 File: CRR115389.bam
CRR115390 CA000-PB-02 File: CRR115390.bam
CRR115391 CA000-PB-03 File: CRR115391.bam
CRR115392 CA000-PB-04 File: CRR115392.bam
CRR115393 CA000-PB-05 File: CRR115393.bam
CRR115394 CA000-PB-06 File: CRR115394.bam
CRR115395 CA000-PB-07 File: CRR115395.bam
CRR115396 CA000-PB-08 File: CRR115396.bam
CRR115397 CA000-PB-09 File: CRR115397.bam
CRR115398 CA000-PB-10 File: CRR115398.bam
CRR115399 CA000-PB-11 File: CRR115399.bam
CRR115400 CA000-PB-12 File: CRR115400.bam
CRR115401 CA000-PB-13 File: CRR115401.bam
CRR115402 CA000-PB-14 File: CRR115402.bam
CRR115403 CA000-PB-15 File: CRR115403.bam
CRR115404 CA000-PB-16 File: CRR115404.bam
CRR115405 CA000-PB-17 File: CRR115405.bam
CRR115406 CA000-PB-18 File: CRR115406.bam
CRR115407 CA000-PB-19 File: CRR115407.bam
CRR115408 CA000-PB-20 File: CRR115408.bam
CRR115409 CA000-PB-21 File: CRR115409.bam
CRR115410 CA000-PB-22 File: CRR115410.bam
CRR115411 CA000-PB-23 File: CRR115411.bam
CRR115412 CA000-PB-24 File: CRR115412.bam
CRR115413 CA000-PB-25 File: CRR115413.bam
CRR115414 CA000-PB-26 File: CRR115414.bam
CRR115415 CA000-PB-27 File: CRR115415.bam
CRR115416 CA000-PB-28 File: CRR115416.bam
CRR115417 CA000-PB-29 File: CRR115417.bam
CRR115418 CA000-PB-30 File: CRR115418.bam
CRR115419 CA000-PB-31 File: CRR115419.bam
CRR115420 CA000-PB-32 File: CRR115420.bam
CRR115421 CA000-PB-33 File: CRR115421.bam
CRR115422 CA000-PB-34 File: CRR115422.bam
CRR115423 CA000-PB-35 File: CRR115423.bam
CRR115424 CA000-PB-36 File: CRR115424.bam
CRR115425 CA000-PB-37 File: CRR115425.bam
CRR115426 CA000-PB-38 File: CRR115426.bam
CRR115427 CA000-PB-39 File: CRR115427.bam
CRR115428 CA000-PB-40 File: CRR115428.bam
CRR115429 CA000-PB-41 File: CRR115429.bam
CRR115430 CA000-PB-42 File: CRR115430.bam
CRR115431 CA000-PB-43 File: CRR115431.bam
CRR115432 CA000-PB-44 File: CRR115432.bam
CRR115433 CA000-PB-45 File: CRR115433.bam
CRR115434 CA000-PB-46 File: CRR115434.bam
CRR115435 CA000-PB-47 File: CRR115435.bam
CRR115436 CA000-PB-48 File: CRR115436.bam
CRR115437 CA000-PB-49 File: CRR115437.bam
CRR115438 CA000-PB-50 File: CRR115438.bam
CRR115439 CA000-PB-51 File: CRR115439.bam
CRR115440 CA000-PB-52 File: CRR115440.bam
CRR115441 CA000-PB-53 File: CRR115441.bam
CRR115442 CA000-PB-54 File: CRR115442.bam
CRR115443 CA000-PB-55 File: CRR115443.bam
CRR115444 CA000-PB-56 File: CRR115444.bam
CRR115445 CA000-PB-57 File: CRR115445.bam
CRR115446 CA000-PB-58 File: CRR115446.bam
CRR115447 CA000-PB-59 File: CRR115447.bam
CRR115448 CA000-PB-60 File: CRR115448.bam
CRR115449 CA000-PB-61 File: CRR115449.bam
CRR115450 CA000-PB-62 File: CRR115450.bam
CRR115451 CA000-PB-63 File: CRR115451.bam
CRR115452 CA000-PB-64 File: CRR115452.bam
CRR115453 CA000-PB-65 File: CRR115453.bam
CRR115454 CA000-PB-66 File: CRR115454.bam
CRR115455 CA000-PB-67 File: CRR115455.bam
CRR115456 CA000-PB-68 File: CRR115456.bam
CRR115457 CA000-PB-69 File: CRR115457.bam
CRR115458 CA000-PB-70 File: CRR115458.bam
CRR115459 CA000-PB-71 File: CRR115459.bam
CRR115460 CA000-PB-72 File: CRR115460.bam
CRR115461 CA000-PB-73 File: CRR115461.bam
CRR115462 CA000-PB-74 File: CRR115462.bam
CRR115463 CA000-PB-75 File: CRR115463.bam
CRR115464 CA000-PB-76 File: CRR115464.bam
CRR115465 CA000-PB-77 File: CRR115465.bam
CRR115466 CA000-PB-78 File: CRR115466.bam
CRR115467 CA000-PB-79 File: CRR115467.bam
CRR115468 CA000-PB-80 File: CRR115468.bam
CRR115469 CA000-PB-81 File: CRR115469.bam
CRR115470 CA000-PB-82 File: CRR115470.bam
CRR115471 CA000-PB-83 File: CRR115471.bam
CRR115472 CA000-PB-84 File: CRR115472.bam
CRR115473 CA000-PB-85 File: CRR115473.bam
CRR115474 CA000-PB-86 File: CRR115474.bam
CRR115475 CA000-PB-87 File: CRR115475.bam
CRR115476 CA000-PB-88 File: CRR115476.bam
CRR115477 CA000-PB-89 File: CRR115477.bam
CRR115478 CA000-PB-90 File: CRR115478.bam
CRR115479 CA000-PB-91 File: CRR115479.bam
CRR115480 CA000-PB-92 File: CRR115480.bam
CRR115481 CA000-PB-93 File: CRR115481.bam
CRR115482 CA000-PB-94 File: CRR115482.bam
CRR115483 CA000-PB-95 File: CRR115483.bam
CRR115484 CA000-PB-96 File: CRR115484.bam
CRR115485 CA000-PB-97 File: CRR115485.bam
CRR115486 CA000-PB-98 File: CRR115486.bam
CRR115487 CA000-PB-99 File: CRR115487.bam
CRR115488 CA000-PB-100 File: CRR115488.bam
CRR115489 CA000-PB-101 File: CRR115489.bam
CRR115490 CA000-PB-102 File: CRR115490.bam
CRR115491 CA000-PB-103 File: CRR115491.bam
CRR115492 CA000-PB-104 File: CRR115492.bam
CRR115493 CA000-PB-105 File: CRR115493.bam
CRR115494 CA000-PB-106 File: CRR115494.bam
CRR115495 CA000-PB-107 File: CRR115495.bam
CRR115496 CA000-PB-108 File: CRR115496.bam
CRR115497 CA000-PB-109 File: CRR115497.bam
CRR115498 CA000-PB-110 File: CRR115498.bam
CRR115499 CA000-PB-111 File: CRR115499.bam
CRR115500 CA000-PB-112 File: CRR115500.bam
CRR115501 CA000-PB-113 File: CRR115501.bam
CRR115502 CA000-PB-114 File: CRR115502.bam
CRR115503 CA000-PB-115 File: CRR115503.bam
CRR115504 CA000-PB-116 File: CRR115504.bam
CRR115505 CA000-PB-117 File: CRR115505.bam
CRR115506 CA000-PB-118 File: CRR115506.bam
CRR115507 CA000-PB-119 File: CRR115507.bam
CRR115508 CA000-PB-120 File: CRR115508.bam
CRR115509 CA000-PB-121 File: CRR115509.bam
CRR115510 CA000-PB-122 File: CRR115510.bam
CRR115511 CA000-PB-123 File: CRR115511.bam
CRR115512 CA000-PB-124 File: CRR115512.bam
CRR115513 CA000-PB-125 File: CRR115513.bam
CRR115514 CA000-PB-126 File: CRR115514.bam
CRR115515 CA000-PB-127 File: CRR115515.bam
CRR115516 CA000-PB-128 File: CRR115516.bam
CRR115517 CA000-PB-129 File: CRR115517.bam
CRR115518 CA000-PB-130 File: CRR115518.bam
CRR115519 CA000-PB-131 File: CRR115519.bam
CRR115520 CA000-PB-132 File: CRR115520.bam
CRR115521 CA000-PB-133 File: CRR115521.bam
CRR115522 CA000-PB-134 File: CRR115522.bam
CRR115523 CA000-PB-135 File: CRR115523.bam
CRR115524 CA000-PB-136 File: CRR115524.bam
CRR115525 CA000-PB-137 File: CRR115525.bam
CRR115526 CA000-PB-138 File: CRR115526.bam
CRR115527 CA000-PB-139 File: CRR115527.bam
CRR115528 CA000-PB-140 File: CRR115528.bam
CRR115529 CA000-PB-141 File: CRR115529.bam
CRR115530 CA000-PB-142 File: CRR115530.bam
CRR115531 CA000-PB-143 File: CRR115531.bam
CRR115532 CA000-PB-144 File: CRR115532.bam
CRR115533 CA000-PB-145 File: CRR115533.bam
CRR115534 CA000-PB-146 File: CRR115534.bam
CRR115535 CA000-PB-147 File: CRR115535.bam
CRR115536 CA000-PB-148 File: CRR115536.bam
CRR115537 CA000-PB-149 File: CRR115537.bam
CRR115538 CA000-PB-150 File: CRR115538.bam
CRR115539 CA000-PB-151 File: CRR115539.bam
CRR115540 CA000-PB-152 File: CRR115540.bam
CRR115541 CA000-PB-153 File: CRR115541.bam
CRR115542 CA000-PB-154 File: CRR115542.bam
CRR115543 CA000-PB-155 File: CRR115543.bam
CRR115544 CA000-PB-156 File: CRR115544.bam
CRR115545 CA000-PB-157 File: CRR115545.bam
CRR115546 CA000-PB-158 File: CRR115546.bam
CRR115547 CA000-PB-159 File: CRR115547.bam
CRR115548 CA000-PB-160 File: CRR115548.bam
CRR115549 CA000-PB-161 File: CRR115549.bam
CRR115550 CA000-PB-162 File: CRR115550.bam
CRR115551 CA000-PB-163 File: CRR115551.bam
CRR115552 CA000-PB-164 File: CRR115552.bam
CRR115553 CA000-PB-165 File: CRR115553.bam
CRR115554 CA000-PB-166 File: CRR115554.bam
CRR115555 CA000-PB-167 File: CRR115555.bam
CRR115556 CA000-PB-168 File: CRR115556.bam
CRR115557 CA000-PB-169 File: CRR115557.bam
CRR115558 CA000-PB-170 File: CRR115558.bam
CRR115559 CA000-PB-171 File: CRR115559.bam
CRR115560 CA000-PB-172 File: CRR115560.bam
CRR115561 CA000-PB-173 File: CRR115561.bam
CRR115562 CA000-PB-174 File: CRR115562.bam
CRR115563 CA000-PB-175 File: CRR115563.bam
CRR115564 CA000-PB-176 File: CRR115564.bam
CRR115565 CA000-PB-177 File: CRR115565.bam
CRR115566 CA000-PB-178 File: CRR115566.bam
CRR115567 CA000-PB-179 File: CRR115567.bam
CRR115568 CA000-PB-180 File: CRR115568.bam
CRR115569 CA000-PB-181 File: CRR115569.bam
CRR115570 CA000-PB-182 File: CRR115570.bam
CRR115571 CA000-PB-183 File: CRR115571.bam
CRR115572 CA000-PB-184 File: CRR115572.bam
CRR115573 CA000-PB-185 File: CRR115573.bam
CRR115574 CA000-PB-186 File: CRR115574.bam
CRR115575 CA000-PB-187 File: CRR115575.bam
CRR115576 CA000-PB-188 File: CRR115576.bam
CRR115577 CA000-PB-189 File: CRR115577.bam
CRR115578 CA000-PB-190 File: CRR115578.bam
CRR115579 CA000-PB-191 File: CRR115579.bam
CRR115580 CA000-PB-192 File: CRR115580.bam
CRR115581 CA000-PB-193 File: CRR115581.bam
CRR115582 CA000-PB-194 File: CRR115582.bam
CRR115583 CA000-PB-195 File: CRR115583.bam
CRR115584 CA000-PB-196 File: CRR115584.bam
CRR115585 CA000-PB-197 File: CRR115585.bam
CRR115586 CA000-PB-198 File: CRR115586.bam
CRR115587 CA000-PB-199 File: CRR115587.bam
CRR115588 CA000-PB-200 File: CRR115588.bam
CRR115589 CA000-PB-201 File: CRR115589.bam
CRR115590 CA000-PB-202 File: CRR115590.bam
CRR115591 CA000-PB-203 File: CRR115591.bam
CRR115592 CA000-PB-204 File: CRR115592.bam
CRR115593 CA000-PB-205 File: CRR115593.bam
CRR115594 CA000-PB-206 File: CRR115594.bam
CRR115595 CA000-PB-207 File: CRR115595.bam
CRR115596 CA000-PB-208 File: CRR115596.bam
CRR115597 CA000-PB-209 File: CRR115597.bam
CRR115598 CA000-PB-210 File: CRR115598.bam
CRR115599 CA000-PB-211 File: CRR115599.bam
CRR115600 CA000-PB-212 File: CRR115600.bam
CRR115601 CA000-PB-213 File: CRR115601.bam
CRR115602 CA000-PB-214 File: CRR115602.bam
CRR115603 CA000-PB-215 File: CRR115603.bam
CRR115604 CA000-PB-216 File: CRR115604.bam
CRR115605 CA000-PB-217 File: CRR115605.bam
CRR115606 CA000-PB-218 File: CRR115606.bam
CRR115607 CA000-PB-219 File: CRR115607.bam
CRR115608 CA000-PB-220 File: CRR115608.bam
CRR115609 CA000-PB-221 File: CRR115609.bam
CRR115610 CA000-PB-222 File: CRR115610.bam
CRX091218 CsLJ43_Hic_B3 Camellia sinensis var. sinensis Illumina HiSeq 4000 SAMC050981
Run accession Run alias Run data file information
CRR115388 D20T18077639-3-111 File: CRR115388_f1.fq.gz
File: CRR115388_r2.fq.gz
CRX091217 CsLJ43_Hic_B2 Camellia sinensis var. sinensis Illumina HiSeq 4000 SAMC050981
Run accession Run alias Run data file information
CRR115387 D20T18077639-1-110 File: CRR115387_f1.fq.gz
File: CRR115387_r2.fq.gz
CRX091216 CsLJ43_HiC_B1 Camellia sinensis var. sinensis Illumina HiSeq 4000 SAMC050981
Run accession Run alias Run data file information
CRR115386 D20T18077640-1-112 File: CRR115386_f1.fq.gz
File: CRR115386_r2.fq.gz
CRX091215 CsLJ43_10x_B3 Camellia sinensis var. sinensis Illumina HiSeq 4000 SAMC050981
Run accession Run alias Run data file information
CRR115382 NDHX00089-AK646 File: CRR115382_f1.fq.gz
File: CRR115382_r2.fq.gz
CRR115383 NDHX00089-AK647 File: CRR115383_f1.fq.gz
File: CRR115383_r2.fq.gz
CRR115384 NDHX00089-AK648 File: CRR115384_f1.fq.gz
File: CRR115384_r2.fq.gz
CRR115385 NDHX00089-AK649 File: CRR115385_f1.fq.gz
File: CRR115385_r2.fq.gz
CRX091214 CsLJ43_10x_B2 Camellia sinensis var. sinensis Illumina HiSeq 4000 SAMC050981
Run accession Run alias Run data file information
CRR115378 KD17061195-AK1267-H35FMCCXY File: CRR115378_f1.fq.gz
File: CRR115378_r2.fq.gz
CRR115379 KD17061195-AK1268-H35FMCCXY File: CRR115379_f1.fq.gz
File: CRR115379_r2.fq.gz
CRR115380 KD17061195-AK1269-H35FMCCXY File: CRR115380_f1.fq.gz
File: CRR115380_r2.fq.gz
CRR115381 KD17061195-AK1270-H35FMCCXY File: CRR115381_f1.fq.gz
File: CRR115381_r2.fq.gz
CRX091213 CsLJ43_10x_B1 Camellia sinensis var. sinensis Illumina HiSeq 4000 SAMC050981
Run accession Run alias Run data file information
CRR115374 KD17061195-AK1270-HCNT3CCXY File: CRR115374_f1.fq.gz
File: CRR115374_r2.fq.gz
CRR115375 KD17061195-AK1268-HCNT3CCXY File: CRR115375_f1.fq.gz
File: CRR115375_r2.fq.gz
CRR115376 KD17061195-AK1269-HCNT3CCXY File: CRR115376_f1.fq.gz
File: CRR115376_r2.fq.gz
CRR115377 KD17061195-AK1267-HCNT3CCXY File: CRR115377_f1.fq.gz
File: CRR115377_r2.fq.gz
CRX091212 CsLJ43_IRYS Camellia sinensis var. sinensis BioNano IRYS SAMC050981
Run accession Run alias Run data file information
CRR115373 CA000-IRYS File: CRR115373.bnx.gz
CRX091211 CHA-YH-2 Camellia sinensis var. assamica Illumina HiSeq 2000 SAMC131570
Run accession Run alias Run data file information
CRR115372 CHA-YH-2 File: CRR115372_f1.fq.gz
File: CRR115372_r2.fq.gz
CRX091210 CHA-YH-1-1 Camellia sinensis var. assamica Illumina HiSeq 2000 SAMC131569
Run accession Run alias Run data file information
CRR115371 CHA-YH-1-1 File: CRR115371_f1.fq.gz
File: CRR115371_r2.fq.gz
CRX091209 CHA-XH-1 Camellia sinensis var. assamica Illumina HiSeq 2000 SAMC131568
Run accession Run alias Run data file information
CRR115370 CHA-XH-1 File: CRR115370_f1.fq.gz
File: CRR115370_r2.fq.gz
CRX091208 CHA-WLH-1 Camellia sinensis var. assamica Illumina HiSeq 2000 SAMC131567
Run accession Run alias Run data file information
CRR115369 CHA-WLH-1 File: CRR115369_f1.fq.gz
File: CRR115369_r2.fq.gz
CRX091207 CHA-CM-1 Camellia sasanqua Illumina HiSeq 2000 SAMC131566
Run accession Run alias Run data file information
CRR115368 CHA-CM-1 File: CRR115368_f1.fq.gz
File: CRR115368_r2.fq.gz
CRX091206 CHA-XSL Camellia sinensis var. sinensis Illumina HiSeq 2000 SAMC131565
Run accession Run alias Run data file information
CRR115367 CHA-XSL File: CRR115367_f1.fq.gz
File: CRR115367_r2.fq.gz
CRX091205 CHA-SLLK Camellia sinensis var. assamica Illumina HiSeq 2000 SAMC131564
Run accession Run alias Run data file information
CRR115366 CHA-SLLK File: CRR115366_f1.fq.gz
File: CRR115366_r2.fq.gz
CRX091204 CHA-zhen Camellia sinensis var. sinensis Illumina HiSeq 2000 SAMC131563
Run accession Run alias Run data file information
CRR115365 CHA-zhen File: CRR115365_f1.fq.gz
File: CRR115365_r2.fq.gz
CRX091203 CHA-JGL Camellia sinensis var. sinensis Illumina HiSeq 2000 SAMC131562
Run accession Run alias Run data file information
CRR115364 CHA-JGL File: CRR115364_f1.fq.gz
File: CRR115364_r2.fq.gz
CRX091202 CHA-YNLDP1 Camellia sinensis var. assamica Illumina HiSeq 2000 SAMC131561
Run accession Run alias Run data file information
CRR115363 CHA-YNLDP1 File: CRR115363_f1.fq.gz
File: CRR115363_r2.fq.gz
CRX091201 CHA-SB Camellia sinensis var. sinensis Illumina HiSeq 2000 SAMC131560
Run accession Run alias Run data file information
CRR115362 CHA-SB File: CRR115362_f1.fq.gz
File: CRR115362_r2.fq.gz
CRX091200 CHA-LBDCS Camellia Illumina HiSeq 2000 SAMC131559
Run accession Run alias Run data file information
CRR115361 CHA-LBDCS File: CRR115361_f1.fq.gz
File: CRR115361_r2.fq.gz
Submitter:alun li (lialun@caas.cn)
Organization:Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Date submitted:2018-12-10