Accession

PRJCA001192

Title

Longitudinal RNA-seq of brest muscle, liver, and abdominal fat in chicken

Relevance

Agricultural

Data types

Transcriptome or Gene expression

Organisms

Gallus gallus

Description

We performed a longitudinal RNA-seq from breast muscle, abdominal fat, and liver tissues from Jingxing-Huang broiler in 9 developmental stages (12 and 17 of embryonic period, and 1, 7, 21, 56, 98, 140, and 180 days after hatching).

Sample scope

Multiisolate

Release date

2020-08-19

Publication

PubMed ID	Article title	Journal name	DOI	Year
33117416	RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development	Frontiers in Genetics	10.3389/fgene.2020.01009	2020
34567076	Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken	Frontiers in Genetics	10.3389/fgene.2021.723519	2021
35052342	Large-Scale Whole Genome Sequencing Study Reveals Genetic Architecture and Key Variants for Breast Muscle Weight in Native Chickens	Genes	10.3390/genes13010003	2021
38065407	Genomic insights into the contribution of de novo lipogenesis to intramuscular fat deposition in chicken	Journal of Advanced Research	10.1016/j.jare.2023.12.003	2023
39094502	Genome-wide mapping of the binding sites of myocyte enhancer factor 2A in chicken primary myoblasts	Poultry Science	10.1016/j.psj.2024.104097	2024
38612272	SSTR2 Mediates the Inhibitory Effect of SST/CST on Lipolysis in Chicken Adipose Tissue	Animals	10.3390/ani14071034	2024
36407004	Mining of chicken muscle growth genes and the function of important candidate gene RPL3L in muscle development	Frontiers in Physiology	10.3389/fphys.2022.1033075	2022
36358250	SLC16A7 Promotes Triglyceride Deposition by De Novo Lipogenesis in Chicken Muscle Tissue	Biology	10.3390/biology11111547	2022

Grants

Agency	program	Grant ID	Grant title
Chinese Academy of Agricutural Sciences		N/A	Agricultural Science and Technology Innovation Program

Submitter

Siyuan Xing (tcsxingsy@126.com)

Organization

Institute of Animal Sciences, Chinese Academy of Agricultural Sciences

Submission date

2019-01-04

Project Data

Resource name	Description
BioSample (72) show	-
SAMC053434	RNA-seq of Chicken: Longitudinal
SAMC053433	RNA-seq of Chicken: Longitudinal
SAMC053432	RNA-seq of Chicken: Longitudinal
SAMC053431	RNA-seq of Chicken: Longitudinal
SAMC053430	RNA-seq of Chicken: Longitudinal
SAMC053429	RNA-seq of Chicken: Longitudinal
SAMC053428	RNA-seq of Chicken: Longitudinal
SAMC053427	RNA-seq of Chicken: Longitudinal
SAMC053426	RNA-seq of Chicken: Longitudinal
SAMC053425	RNA-seq of Chicken: Longitudinal
SAMC053424	RNA-seq of Chicken: Longitudinal
SAMC053423	RNA-seq of Chicken: Longitudinal
SAMC053422	RNA-seq of Chicken: Longitudinal
SAMC053421	RNA-seq of Chicken: Longitudinal
SAMC053420	RNA-seq of Chicken: Longitudinal
SAMC053419	RNA-seq of Chicken: Longitudinal
SAMC053418	RNA-seq of Chicken: Longitudinal
SAMC053417	RNA-seq of Chicken: Longitudinal
SAMC053416	RNA-seq of Chicken: Longitudinal
SAMC053415	RNA-seq of Chicken: Longitudinal
SAMC053414	RNA-seq of Chicken: Longitudinal
SAMC053413	RNA-seq of Chicken: Longitudinal
SAMC053412	RNA-seq of Chicken: Longitudinal
SAMC053411	RNA-seq of Chicken: Longitudinal
SAMC053410	RNA-seq of Chicken: Longitudinal
SAMC053409	RNA-seq of Chicken: Longitudinal
SAMC053408	RNA-seq of Chicken: Longitudinal
SAMC053407	RNA-seq of Chicken: Longitudinal
SAMC053406	RNA-seq of Chicken: Longitudinal
SAMC053405	RNA-seq of Chicken: Longitudinal
SAMC053404	RNA-seq of Chicken: Longitudinal
SAMC053403	RNA-seq of Chicken: Longitudinal
SAMC053402	RNA-seq of Chicken: Longitudinal
SAMC053401	RNA-seq of Chicken: Longitudinal
SAMC053400	RNA-seq of Chicken: Longitudinal
SAMC053399	RNA-seq of Chicken: Longitudinal
SAMC053398	RNA-seq of Chicken: Longitudinal
SAMC053397	RNA-seq of Chicken: Longitudinal
SAMC053396	RNA-seq of Chicken: Longitudinal
SAMC053395	RNA-seq of Chicken: Longitudinal
SAMC053394	RNA-seq of Chicken: Longitudinal
SAMC053393	RNA-seq of Chicken: Longitudinal
SAMC053392	RNA-seq of Chicken: Longitudinal
SAMC053391	RNA-seq of Chicken: Longitudinal
SAMC053390	RNA-seq of Chicken: Longitudinal
SAMC053389	RNA-seq of Chicken: Longitudinal
SAMC053388	RNA-seq of Chicken: Longitudinal
SAMC053387	RNA-seq of Chicken: Longitudinal
SAMC053386	RNA-seq of Chicken: Longitudinal
SAMC053385	RNA-seq of Chicken: Longitudinal
SAMC053384	RNA-seq of Chicken: Longitudinal
SAMC053383	RNA-seq of Chicken: Longitudinal
SAMC053382	RNA-seq of Chicken: Longitudinal
SAMC053381	RNA-seq of Chicken: Longitudinal
SAMC053380	RNA-seq of Chicken: Longitudinal
SAMC053379	RNA-seq of Chicken: Longitudinal
SAMC053378	RNA-seq of Chicken: Longitudinal
SAMC053377	RNA-seq of Chicken: Longitudinal
SAMC053376	RNA-seq of Chicken: Longitudinal
SAMC053375	RNA-seq of Chicken: Longitudinal
SAMC053374	RNA-seq samples collected on embryonic day 17
SAMC053373	RNA-seq samples collected on embryonic day 17
SAMC053372	RNA-seq samples collected on embryonic day 17
SAMC053371	RNA-seq samples collected on embryonic day 17
SAMC053370	RNA-seq samples collected on embryonic day 17
SAMC053369	RNA-seq samples collected on embryonic day 17
SAMC053368	RNA-seq samples collected on embryonic day 12
SAMC053367	RNA-seq samples collected on embryonic day 12
SAMC053366	RNA-seq samples collected on embryonic day 12
SAMC053365	RNA-seq samples collected on embryonic day 12
SAMC053364	RNA-seq samples collected on embryonic day 12
SAMC053363	RNA-seq samples collected on embryonic day 12
GSA (1)	-
CRA001334	Longitudinal RNA-seq of breast muscle, liver, and abdominal fat in chicken