| Accession | PRJCA003033 | ||||||||||
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| Title | Raphanus pan-genome | ||||||||||
| Relevance | Agricultural | ||||||||||
| Data types |
Whole genome sequencing
Transcriptome or Gene expression Genome sequencing and assembly Raw sequence reads |
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| Organisms |
Raphanus sativus var. sativus
Raphanus sativus var. oleiformis Raphanus sativus var. caudatus Raphanus raphanistrum subsp. landra Raphanus raphanistrum subsp. raphanistrum Raphanus sativus var. niger Raphanus sativus var. raphanistroides Raphanus raphanistrum |
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| Description | To reveal the evolution, speciation, gene flow and pan-genome of Raphanus, we de novo assembled eleven genomes covering all of the typical sub-species and varieties of domesticated, wild and weed radishes, coming from east Asian, south Asian, Europe and America, using single-molecule sequencing, BioNano optical mapping and high-through chromosome conformation capture (HiC) technologies. | ||||||||||
| Sample scope | Multispecies | ||||||||||
| Release date | 2020-07-13 | ||||||||||
| Publication |
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| Grants |
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| Submitter | Xiaohui Zhang (zhangxiaohui01@caas.cn) | ||||||||||
| Organization | Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences | ||||||||||
| Submission date | 2020-07-13 |