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CRA003686 Information
Title: Eleven radish genomes
BioProject: PRJCA003033 /
Release date: 2022-09-01
Files: 110
File size: 1198.73 GB
Publication
Article title
Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild, and weedy radishes
Journal name
Molecular Plant
Year
2021
DOI
10.1016/j.molp.2021.08.005
PubMed ID
34384905

Dataset Downlaod
MetaData:
CRA003686.xlsx
Files:
HTTPS：https://download.cncb.ac.cn/gsa2/CRA003686
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX199954 RS10llumina Raphanus raphanistrum Illumina HiSeq X Ten SAMC199889
Run accession Run alias Run data file information
CRR233079 RS10lluminaR94 File: CRR233079.fastq.gz
CRR233080 RS10lluminaR95 File: CRR233080.fastq.gz
CRX199953 RS09llumina Raphanus raphanistrum subsp. raphanistrum Illumina HiSeq X Ten SAMC199888
Run accession Run alias Run data file information
CRR233073 RS09lluminaR88 File: CRR233073.fastq.gz
CRR233074 RS09lluminaR89 File: CRR233074.fastq.gz
CRR233075 RS09lluminaR90 File: CRR233075.fastq.gz
CRR233076 RS09lluminaR91 File: CRR233076.fastq.gz
CRR233077 RS09lluminaR92 File: CRR233077.fastq.gz
CRR233078 RS09lluminaR93 File: CRR233078.fastq.gz
CRX199952 RS08llumina Raphanus raphanistrum subsp. landra Illumina HiSeq X Ten SAMC199887
Run accession Run alias Run data file information
CRR233069 RS08lluminaR84 File: CRR233069.fastq.gz
CRR233070 RS08lluminaR85 File: CRR233070.fastq.gz
CRR233071 RS08lluminaR86 File: CRR233071.fastq.gz
CRR233072 RS08lluminaR87 File: CRR233072.fastq.gz
CRX199951 RS07llumina Raphanus sativus var. raphanistroides Illumina HiSeq X Ten SAMC199886
Run accession Run alias Run data file information
CRR233061 RS07lluminaR76 File: CRR233061.fastq.gz
CRR233062 RS07lluminaR77 File: CRR233062.fastq.gz
CRR233063 RS07lluminaR78 File: CRR233063.fastq.gz
CRR233064 RS07lluminaR79 File: CRR233064.fastq.gz
CRR233065 RS07lluminaR80 File: CRR233065.fastq.gz
CRR233066 RS07lluminaR81 File: CRR233066.fastq.gz
CRR233067 RS07lluminaR82 File: CRR233067.fastq.gz
CRR233068 RS07lluminaR83 File: CRR233068.fastq.gz
CRX199950 RS06llumina Raphanus sativus var. sativus Illumina HiSeq X Ten SAMC199885
Run accession Run alias Run data file information
CRR233057 RS06lluminaR72 File: CRR233057.fastq.gz
CRR233058 RS06lluminaR73 File: CRR233058.fastq.gz
CRR233059 RS06lluminaR74 File: CRR233059.fastq.gz
CRR233060 RS06lluminaR75 File: CRR233060.fastq.gz
CRX199949 RS05llumina Raphanus sativus var. niger Illumina HiSeq X Ten SAMC199884
Run accession Run alias Run data file information
CRR233053 RS05lluminaR68 File: CRR233053.fastq.gz
CRR233054 RS05lluminaR69 File: CRR233054.fastq.gz
CRR233055 RS05lluminaR70 File: CRR233055.fastq.gz
CRR233056 RS05lluminaR71 File: CRR233056.fastq.gz
CRX199948 RS04llumina Raphanus sativus var. niger Illumina HiSeq X Ten SAMC199883
Run accession Run alias Run data file information
CRR233049 RS04lluminaR64 File: CRR233049.fastq.gz
CRR233050 RS04lluminaR65 File: CRR233050.fastq.gz
CRR233051 RS04lluminaR66 File: CRR233051.fastq.gz
CRR233052 RS04lluminaR67 File: CRR233052.fastq.gz
CRX199947 RS03llumina Raphanus sativus var. niger Illumina HiSeq X Ten SAMC199882
Run accession Run alias Run data file information
CRR233045 RS03lluminaR60 File: CRR233045.fastq.gz
CRR233046 RS03lluminaR61 File: CRR233046.fastq.gz
CRR233047 RS03lluminaR62 File: CRR233047.fastq.gz
CRR233048 RS03lluminaR63 File: CRR233048.fastq.gz
CRX199946 RS02llumina Raphanus sativus var. oleiformis Illumina HiSeq X Ten SAMC199881
Run accession Run alias Run data file information
CRR233041 RS02lluminaR56 File: CRR233041.fastq.gz
CRR233042 RS02lluminaR57 File: CRR233042.fastq.gz
CRR233043 RS02lluminaR58 File: CRR233043.fastq.gz
CRR233044 RS02lluminaR59 File: CRR233044.fastq.gz
CRX199945 RS01llumina Raphanus sativus var. caudatus Illumina HiSeq X Ten SAMC199880
Run accession Run alias Run data file information
CRR233037 RS01lluminaR52 File: CRR233037.fastq.gz
CRR233038 RS01lluminaR53 File: CRR233038.fastq.gz
CRR233039 RS01lluminaR54 File: CRR233039.fastq.gz
CRR233040 RS01lluminaR55 File: CRR233040.fastq.gz
CRX199944 RS00llumina Raphanus sativus var. niger Illumina HiSeq X Ten SAMC199879
Run accession Run alias Run data file information
CRR233031 RS00lluminaR46 File: CRR233031.fastq.gz
CRR233032 RS00lluminaR47 File: CRR233032.fastq.gz
CRR233033 RS00lluminaR48 File: CRR233033.fastq.gz
CRR233034 RS00lluminaR49 File: CRR233034.fastq.gz
CRR233035 RS00lluminaR50 File: CRR233035.fastq.gz
CRR233036 RS00lluminaR51 File: CRR233036.fastq.gz
CRX199943 RS00_iso_seq Raphanus sativus var. niger PacBio Sequel SAMC199901
Run accession Run alias Run data file information
CRR233081 RS00PacBioR96 File: CRR233081.bam
CRR233082 RS00PacBioR97 File: CRR233082.bam
CRR233083 RS00PacBioR98 File: CRR233083.bam
CRR233084 RS00PacBioR99 File: CRR233084.bam
CRX199942 RS10RNAseq Raphanus raphanistrum Illumina HiSeq X Ten SAMC199900
Run accession Run alias Run data file information
CRR233030 RS10lluminaR45 File: CRR233030_f1.fastq.gz
File: CRR233030_r2.fastq.gz
CRX199941 RS09RNAseq Raphanus raphanistrum subsp. raphanistrum Illumina HiSeq X Ten SAMC199899
Run accession Run alias Run data file information
CRR233029 RS09lluminaR44 File: CRR233029_f1.fastq.gz
File: CRR233029_r2.fastq.gz
CRX199940 RS08RNAseq Raphanus raphanistrum subsp. landra Illumina HiSeq X Ten SAMC199898
Run accession Run alias Run data file information
CRR233028 RS08lluminaR43 File: CRR233028_f1.fastq.gz
File: CRR233028_r2.fastq.gz
CRX199939 RS07RNAseq Raphanus sativus var. raphanistroides Illumina HiSeq X Ten SAMC199897
Run accession Run alias Run data file information
CRR233027 RS07lluminaR42 File: CRR233027_f1.fastq.gz
File: CRR233027_r2.fastq.gz
CRX199938 RS06RNAseq Raphanus sativus var. sativus Illumina HiSeq X Ten SAMC199896
Run accession Run alias Run data file information
CRR233026 RS06lluminaR41 File: CRR233026_f1.fastq.gz
File: CRR233026_r2.fastq.gz
CRX199937 RS05RNAseq Raphanus sativus var. niger Illumina HiSeq X Ten SAMC199895
Run accession Run alias Run data file information
CRR233025 RS05lluminaR40 File: CRR233025_f1.fastq.gz
File: CRR233025_r2.fastq.gz
CRX199936 RS04RNAseq Raphanus sativus var. niger Illumina HiSeq X Ten SAMC199894
Run accession Run alias Run data file information
CRR233024 RS04lluminaR39 File: CRR233024_f1.fastq.gz
File: CRR233024_r2.fastq.gz
CRX199935 RS03RNAseq Raphanus sativus var. niger Illumina HiSeq X Ten SAMC199893
Run accession Run alias Run data file information
CRR233023 RS03lluminaR38 File: CRR233023_f1.fastq.gz
File: CRR233023_r2.fastq.gz
Submitter:Xiaohui Zhang (zhangxiaohui01@caas.cn)
Organization:Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Date submitted:2020-12-30