Accession

PRJCA003625

Title

Multi-omics data in the allotetraploid complex of red crucian carp and common carp

Relevance

Agricultural

Data types

Whole genome sequencing
Epigenomics
Transcriptome or Gene expression
Raw sequence reads
Assembly

Organisms

Carassius auratus x Cyprinus carpio
triploid Cyprinus carpio x (Carassius auratus red var. x Cyprinus carpio)
Carassius auratus red var.
Cyprinus carpio
triploid hybrid of Carassius auratus red var. x allotetraploid (Carassius auratus red var. x Cyprinus carpio)
Carassius auratus red var. x Cyprinus carpio

Description

Comparative analysis on the allotetraploid complex of red crucian carp and common carp

Sample scope

Multiisolate

Release date

2022-07-01

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)		31702334
National Natural Science Foundation of China (NSFC)		U19A2040
National Natural Science Foundation of China (NSFC)		31730098
National Natural Science Foundation of China (NSFC)		91631305

Submitter

Li Ren (renli_333@163.com)

Organization

Hunan normal university

Submission date

2020-10-09

Project Data

Resource name	Description
BioSample (131) show	-
SAMC462634	octoploid
SAMC449141	RCC-2-M-2021420
SAMC449140	RCC-CC-re-genome-Illumina
SAMC449139	4NJL-Xu-3
SAMC449138	4NJL-Xu-2
SAMC449137	4NJL-Xu-1
SAMC449136	JLF1-Xu-3
SAMC449135	JLF1-Xu-2
SAMC449134	JLF1-Xu-1
SAMC449133	CC-Xu-3
SAMC449132	CC-Xu-2
SAMC449131	CC-Xu-1
SAMC449130	RCC-Xu-3
SAMC449129	RCC-Xu-2
SAMC449128	RCC-Xu-1
SAMC448917	JL-F1-2-X-2
SAMC448916	JL-F1-2-M-1
SAMC448915	1-JL-F1-1-XX-2021413
SAMC448914	1-JL-F1-1-M-2021413
SAMC448913	4NJL-3-G
SAMC448912	4NJL-3-M
SAMC448911	4NJL-2-G
SAMC448910	4NJL-2-M
SAMC448909	4NJL-1-G
SAMC448908	4NJL-1-M
SAMC448001	4NJL-5-re-genome
SAMC448000	4NJL-4-re-genome
SAMC447999	4NJL-3-re-genome
SAMC447998	4NJL-2-re-genome
SAMC447997	4NJL-1-re-genome
SAMC447996	4NJL-F-5
SAMC447995	4NJL-F-4
SAMC447994	4NJL-F-3
SAMC447993	4NJL-F-2
SAMC447992	4NJL-F-1
SAMC299936	CC-M-3
SAMC299935	CC-M-2
SAMC299934	CC-M-1
SAMC299933	RCC-M-3
SAMC299932	RCC-M-2
SAMC299931	RCC-M-1
SAMC299930	3NL-M-3
SAMC299929	3NL-M-2
SAMC299928	3NL-M-1
SAMC299927	3NJ-M-3
SAMC299926	3NJ-M-2
SAMC299925	3NJ-M-1
SAMC291074	4NJL-C-3
SAMC291073	4NJL-C-2
SAMC291072	4NJL-C-1
SAMC291071	4NJL-S-3
SAMC291070	4NJL-S-2
SAMC291069	4NJL-S-1
SAMC291068	4NJL-Y-3
SAMC291067	4NJL-Y-2
SAMC291066	4NJL-Y-1
SAMC291065	4NJL-N-3
SAMC291064	4NJL-N-2
SAMC291063	4NJL-N-1
SAMC251278	CC-C-3
SAMC251277	CC-C-2
SAMC251276	CC-C-1
SAMC251275	CC-S-3
SAMC251274	CC-S-2
SAMC251273	CC-S-1
SAMC251272	CC-Y-3
SAMC251271	CC-Y-2
SAMC251270	CC-Y-1
SAMC251269	CC-N-3
SAMC251268	CC-N-2
SAMC251267	CC-N-1
SAMC251266	RCC-C-3
SAMC251265	RCC-C-2
SAMC251264	RCC-C-1
SAMC251263	RCC-S-3
SAMC251262	RCC-S-2
SAMC251261	RCC-S-1
SAMC251260	RCC-Y-3
SAMC251259	RCC-Y-2
SAMC251258	RCC-Y-1
SAMC251257	RCC-N-3
SAMC251256	RCC-N-2
SAMC251255	RCC-N-1
SAMC251254	JL-F1-C-3
SAMC251253	JL-F1-C-2
SAMC251252	JL-F1-C-1
SAMC251251	JL-F1-S-3
SAMC251250	JL-F1-S-2
SAMC251249	JL-F1-S-1
SAMC251248	JL-F1-Y-3
SAMC251247	JL-F1-Y-2
SAMC251246	JL-F1-Y-1
SAMC251245	JL-F1-N-3
SAMC251244	JL-F1-N-2
SAMC251243	JL-F1-N-1
SAMC251242	LJ-F1-C-3
SAMC251241	LJ-F1-C-2
SAMC251240	LJ-F1-C-1
SAMC251239	LJ-F1-S-3
SAMC251238	LJ-F1-S-2
SAMC251237	LJ-F1-S-1
SAMC251236	LJ-F1-Y-3
SAMC251235	LJ-F1-Y-2
SAMC251234	LJ-F1-Y-1
SAMC251233	LJ-F1-N-3
SAMC251232	LJ-F1-N-2
SAMC251231	LJ-F1-N-1
SAMC251230	3NL-C-3
SAMC251229	3NL-C-2
SAMC251228	3NL-C-1
SAMC251227	3NL-S-3
SAMC251226	3NL-S-2
SAMC251225	3NL-S-1
SAMC251224	3NL-Y-3
SAMC251223	3NL-Y-2
SAMC251222	3NL-Y-1
SAMC251221	3NL-N-3
SAMC251220	3NL-N-2
SAMC251219	3NL-N-1
SAMC251218	3NJ-C-3
SAMC251217	3NJ-C-2
SAMC251216	3NJ-C-1
SAMC251215	3NJ-S-3
SAMC251214	3NJ-S-2
SAMC251213	3NJ-S-1
SAMC251212	3NJ-Y-3
SAMC251211	3NJ-Y-2
SAMC251210	3NJ-Y-1
SAMC251209	3NJ-N-3
SAMC251208	3NJ-N-2
SAMC251207	3NJ-N-1
GSA (1)	-
CRA003321	Genomic, epigenomic, and transcriptomic sequencing on the allotetraploid complex of red crucian carp and common carp