项目编号 PRJCA003631
项目标题 The hidden diversity of circular RNAs unveiled by Nanopore Sequencing
涉及领域 Genetics
数据类型 Transcriptome or Gene expression
物种名称 Mus musculus
描述信息 We propose a novel sequencing protocol for circular RNA enrichment and full-length sequencing of circular RNA isoforms using Nanopore sequencing. By utilizing circular reverse transcription and fragment size selection, circRNAs can be efficiently enriched (20 fold higher than previous methods) from total RNA. With the advantages of Nanopore sequencing, our method has promising applicability in unbiased characterization and reconstruction of full-length circRNA sequences.
样品范围 Monoisolate
发布日期 2021-01-30
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
33707777 Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long Nature Biotechnology 10.1038/s41587-021-00842-6 2021
37045995 Full-length circular RNA profiling by nanopore sequencing with CIRI-long Nature Protocols 10.1038/s41596-023-00815-w 2023
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) 31722031
提交者 Zhang Jinyang (zhangjinyang@biols.ac.cn)
提交单位 Beijing Institutes of Life Science
提交日期 2020-10-09

项目包含数据信息

资源名称 描述
BioSample (2) -
SAMC251360 RNA-seq of mus musculus; adult
SAMC251359 RNA-seq of mus musculus; adult
GSA (1) -
CRA003317 Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long