Accession PRJCA004735
Title Human keratoconus study
Relevance Medical
Data types Transcriptome or Gene expression
Raw sequence reads
Organisms Homo sapiens
Description Keratoconus (KC) is an asymmetric, progressive ectatic condition that can lead to significant visual impairment. Although the disease has high prevalence, the molecular mechanisms of the disease is not well understood. Here, we analyzed 39,214 cells from normal and KC corneas by single-cell RNA-seq and classify them into 3 cell types using clustering algorithms. Our data indicated that during KC, there was no change in cell composition rather than gene expression and function. CTSD and CTSK, the new markers of keratoconus stromal cells, is validated by immunostaining and biomechanical testing. Hyper differentiated of superficial cells and striking drop in basal cells is a prominent manifestation of KC epithelial cells. Meanwhile, KC presented with increased inflammation. Finally, our single cell RNA-seq data of cornea in steady state and diseases condition provide a unique resource for defining genes that can lead to KC and better understanding and treatment of KC.
Sample scope Single cell
Release date 2022-08-09
Grants
Agency program Grant ID Grant title
The Taishan Scholar Foundation of Shandong Province 201812150
National Natural Science Foundation of China (NSFC) 82070923
Academic Promotion Programme of Shandong First Medical University 2019RC009
Submitter Hua    Gao  (hgao@sdfmu.edu.cn)
Organization Shandong First Medical University
Submission date 2021-03-18

Project Data

Resource name Description
BioSample (7)  show -