Accession SAMC1649203
Accession in Other Database GSA-Human: HRS148706
Sample name Y35_L
Title Y35_L
Sample type Human sample
Organism Homo sapiens
Description scRNA-seq data for normal central cornea
Attributes *This sample record contains additional controlled-access information that is avaiable from GSA-Human by requesting study HRA000728 in the GSA-Human system.
Release date 2022-08-09
BioProject Accession PRJCA004735
Submitter Shengqian  Dou  (hgao@sdfmu.edu.cn)
Organization Shandong First Medical University
Submission date 2023-06-18

Sample Data

Resource name Description
GSA-Human (1) -
HRA000728  (Controlled Access) Keratoconus (KC) is an asymmetric, progressive ectatic condition that can lead to significant visual impairment. Although the disease has high prevalence, the molecular mechanisms of the disease is not well understood. Here, we analyzed 39,214 cells from normal and KC corneas by single-cell RNA-seq and classify them into 3 cell types using clustering algorithms. Our data indicated that during KC, there was no change in cell composition rather than gene expression and function. CTSD and CTSK, the new markers of keratoconus stromal cells, is validated by immunostaining and biomechanical testing. Hyper differentiated of superficial cells and striking drop in basal cells is a prominent manifestation of KC epithelial cells. Meanwhile, KC presented with increased inflammation. Finally, our single cell RNA-seq data of cornea in steady state and diseases condition provide a unique resource for defining genes that can lead to KC and better understanding and treatment of KC.
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