Accession

PRJCA004855

Title

Single-cell transcriptome atlas of rice seedlings

Relevance

Model organism

Data types

Transcriptome or Gene expression

Organisms

Oryza sativa
Oryza sativa Japonica Group
mixed sample

Description

We applied single-cell RNA sequencing to both shoot and root of rice seedlings, using Arabidopsis cells as a spike-in control, in an effort to provide a single-cell transcriptome atlas of rice whole seedlings. We characterized transcriptomes for a total of 237,431 individual cells from rice seedlings growing in Kimura B nutrient solution or exposed to abiotic stress.

Sample scope

Single cell

Release date

2021-06-18

Grants

Agency	program	Grant ID	Grant title
No funding support

Submitter

Qing Huan (qhuan@genetics.ac.cn)

Organization

Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

Submission date

2021-04-16

Project Data

Resource name	Description
BioSample (28) show	-
SAMC350969	mRNA-seq of rice mesophyll in HS
SAMC350968	mRNA-seq of rice mesophyll in Ctrl
SAMC350967	mRNA-seq of post-protoplasting replicate 2
SAMC350966	mRNA-seq of post-protoplasting replicate 1
SAMC350965	mRNA-seq of pre-protoplasting replicate 2
SAMC350964	mRNA-seq of pre-protoplasting replicate 1
SAMC350963	scRNA-seq of rice seedling in ID replicate 4
SAMC350962	scRNA-seq of rice seedling in HS replicate 4
SAMC350961	scRNA-seq of rice seedling in LN replicate 4
SAMC350960	scRNA-seq of rice seedling in Ctrl replicate 4
SAMC350959	scRNA-seq of rice seedling in ID replicate 3
SAMC350958	scRNA-seq of rice seedling in HS replicate 3
SAMC350957	scRNA-seq of rice seedling in LN replicate 3
SAMC350956	scRNA-seq of rice seedling in Ctrl replicate 3
SAMC350955	scRNA-seq of rice seedling in ID replicate 2
SAMC350954	scRNA-seq of rice seedling in HS replicate 2
SAMC350953	scRNA-seq of rice seedling in LN replicate 2
SAMC350952	scRNA-seq of rice seedling in Ctrl replicate 2
SAMC350951	scRNA-seq of rice seedling in ID replicate 1
SAMC350950	scRNA-seq of rice seedling in HS replicate 1
SAMC350949	scRNA-seq of rice seedling in LN replicate 1
SAMC350948	scRNA-seq of rice seedling in Ctrl replicate 1
SAMC350947	scRNA-seq of rice root replicate2
SAMC350946	scRNA-seq of rice root replicate1
SAMC350945	scRNA-seq of rice leaf replicate2
SAMC350944	scRNA-seq of rice leaf replicate1
SAMC350943	scRNA-seq of quality control replicate 2
SAMC350942	scRNA-seq of quality control replicate 1
GSA (1)	-
CRA004082	Single-cell transcriptome atlas of rice seedlings