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CRA004082 Information
Title: Single-cell transcriptome atlas of rice seedlings
BioProject: PRJCA004855 /
Release date: 2021-06-18
Files: 108
File size: 2942.26 GB
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX235989 Mesophyll cell bulk RNA-seq (HS) Oryza sativa Illumina NovaSeq 6000 SAMC350969
Run accession Run alias Run data file information
CRR279180 Mesophyll_cell_bulk RNA-seq (HS) File: CRR279180_f1.fastq.gz
File: CRR279180_r2.fastq.gz
CRX235988 Mesophyll cell bulk RNA-seq (Ctrl) Oryza sativa Illumina NovaSeq 6000 SAMC350968
Run accession Run alias Run data file information
CRR279179 Mesophyll_cell_bulk RNA-seq (Ctrl) File: CRR279179_f1.fastq.gz
File: CRR279179_r2.fastq.gz
CRX235987 Post-protoplasting replicate 2 mixed sample Illumina NovaSeq 6000 SAMC350967
Run accession Run alias Run data file information
CRR279178 Post-protoplasting_replicate_2 File: CRR279178_f1.fastq.gz
File: CRR279178_r2.fastq.gz
CRX235986 Post-protoplasting replicate 1 mixed sample Illumina NovaSeq 6000 SAMC350966
Run accession Run alias Run data file information
CRR279177 Post-protoplasting_replicate_1 File: CRR279177_f1.fastq.gz
File: CRR279177_r2.fastq.gz
CRX235985 Pre-protoplasting replicate 2 mixed sample Illumina NovaSeq 6000 SAMC350965
Run accession Run alias Run data file information
CRR279176 Pre-protoplasting_replicate_2 File: CRR279176_f1.fastq.gz
File: CRR279176_r2.fastq.gz
CRX235984 Pre-protoplasting replicate 1 mixed sample Illumina NovaSeq 6000 SAMC350964
Run accession Run alias Run data file information
CRR279175 Pre-protoplasting_replicate_1 File: CRR279175_f1.fastq.gz
File: CRR279175_r2.fastq.gz
CRX235983 ID-4 Oryza sativa Illumina NovaSeq 6000 SAMC350963
Run accession Run alias Run data file information
CRR279171 ID-4_S1 File: CRR279171.tar
CRR279172 ID-4_S2 File: CRR279172.tar
CRR279173 ID-4_S3 File: CRR279173.tar
CRR279174 ID-4_S4 File: CRR279174.tar
CRX235982 HS-4 Oryza sativa Illumina NovaSeq 6000 SAMC350962
Run accession Run alias Run data file information
CRR279167 HS-4_S1 File: CRR279167.tar
CRR279168 HS-4_S2 File: CRR279168.tar
CRR279169 HS-4_S3 File: CRR279169.tar
CRR279170 HS-4_S4 File: CRR279170.tar
CRX235981 LN-4 Oryza sativa Illumina NovaSeq 6000 SAMC350961
Run accession Run alias Run data file information
CRR279163 LN-4_S1 File: CRR279163.tar
CRR279164 LN-4_S2 File: CRR279164.tar
CRR279165 LN-4_S3 File: CRR279165.tar
CRR279166 LN-4_S4 File: CRR279166.tar
CRX235980 Seedling-4 Oryza sativa Illumina NovaSeq 6000 SAMC350960
Run accession Run alias Run data file information
CRR279159 Seedling-4_S1 File: CRR279159.tar
CRR279160 Seedling-4_S2 File: CRR279160.tar
CRR279161 Seedling-4_S3 File: CRR279161.tar
CRR279162 Seedling-4_S4 File: CRR279162.tar
CRX235979 ID-3 Oryza sativa Illumina NovaSeq 6000 SAMC350959
Run accession Run alias Run data file information
CRR279155 ID-3_S5 File: CRR279155.tar
CRR279156 ID-3_S6 File: CRR279156.tar
CRR279157 ID-3_S7 File: CRR279157.tar
CRR279158 ID-3_S8 File: CRR279158.tar
CRX235978 HS-3 Oryza sativa Illumina NovaSeq 6000 SAMC350958
Run accession Run alias Run data file information
CRR279151 HS-3_S1 File: CRR279151.tar
CRR279152 HS-3_S2 File: CRR279152.tar
CRR279153 HS-3_S3 File: CRR279153.tar
CRR279154 HS-3_S4 File: CRR279154.tar
CRX235977 LN-3 Oryza sativa Illumina NovaSeq 6000 SAMC350957
Run accession Run alias Run data file information
CRR279147 LN-3_S5 File: CRR279147.tar
CRR279148 LN-3_S6 File: CRR279148.tar
CRR279149 LN-3_S7 File: CRR279149.tar
CRR279150 LN-3_S8 File: CRR279150.tar
CRX235976 Seedling-3 Oryza sativa Illumina NovaSeq 6000 SAMC350956
Run accession Run alias Run data file information
CRR279143 Seedling-3_S1 File: CRR279143.tar
CRR279144 Seedling-3_S2 File: CRR279144.tar
CRR279145 Seedling-3_S3 File: CRR279145.tar
CRR279146 Seedling-3_S4 File: CRR279146.tar
CRX235975 ID-2 Oryza sativa Illumina NovaSeq 6000 SAMC350955
Run accession Run alias Run data file information
CRR279139 ID-2_S9 File: CRR279139.tar
CRR279140 ID-2_S10 File: CRR279140.tar
CRR279141 ID-2_S11 File: CRR279141.tar
CRR279142 ID-2_S12 File: CRR279142.tar
CRX235974 HS-2 Oryza sativa Illumina NovaSeq 6000 SAMC350954
Run accession Run alias Run data file information
CRR279135 HS-2_S9 File: CRR279135.tar
CRR279136 HS-2_S10 File: CRR279136.tar
CRR279137 HS-2_S11 File: CRR279137.tar
CRR279138 HS-2_S12 File: CRR279138.tar
CRX235973 LN-2 Oryza sativa Illumina NovaSeq 6000 SAMC350953
Run accession Run alias Run data file information
CRR279127 LN-2_S5 File: CRR279127.tar
CRR279128 LN-2_S6 File: CRR279128.tar
CRR279129 LN-2_S7 File: CRR279129.tar
CRR279130 LN-2_S8 File: CRR279130.tar
CRR279131 LN-2_S37 File: CRR279131.tar
CRR279132 LN-2_S38 File: CRR279132.tar
CRR279133 LN-2_S39 File: CRR279133.tar
CRR279134 LN-2_S40 File: CRR279134.tar
CRX235972 Seedling-2 Oryza sativa Illumina NovaSeq 6000 SAMC350952
Run accession Run alias Run data file information
CRR279123 Seedling-2_S1 File: CRR279123.tar
CRR279124 Seedling-2_S2 File: CRR279124.tar
CRR279125 Seedling-2_S3 File: CRR279125.tar
CRR279126 Seedling-2_S4 File: CRR279126.tar
CRX235971 ID-1 Oryza sativa Illumina NovaSeq 6000 SAMC350951
Run accession Run alias Run data file information
CRR279115 ID-1_S9 File: CRR279115.tar
CRR279116 ID-1_S10 File: CRR279116.tar
CRR279117 ID-1_S11 File: CRR279117.tar
CRR279118 ID-1_S12 File: CRR279118.tar
CRR279119 ID-1_S33 File: CRR279119.tar
CRR279120 ID-1_S34 File: CRR279120.tar
CRR279121 ID-1_S35 File: CRR279121.tar
CRR279122 ID-1_S36 File: CRR279122.tar
CRX235970 HS-1 Oryza sativa Illumina NovaSeq 6000 SAMC350950
Run accession Run alias Run data file information
CRR279111 HS-1_S5 File: CRR279111.tar
CRR279112 HS-1_S6 File: CRR279112.tar
CRR279113 HS-1_S7 File: CRR279113.tar
CRR279114 HS-1_S8 File: CRR279114.tar
Submitter:Qing Huan (qhuan@genetics.ac.cn)
Organization:Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Date submitted:2021-04-16