| 项目编号 | PRJCA012952 | ||||||||||||||||
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| 项目标题 | Origin and subgenome evolution of three independent allopolyploid cyprinid fishes | ||||||||||||||||
| 涉及领域 | Evolution | ||||||||||||||||
| 数据类型 |
Epigenomics
Transcriptome or Gene expression Genome sequencing and assembly Raw sequence reads HiC data |
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| 物种名称 |
Scaphiodonichthys acanthopterus
Spinibarbus sinensis Ladislavia taczanowskii Luciobarbus capito Procypris rabaudi Crossocheilus oblongus Belligobio pengxianensis Squaliobarbus curriculus Rhodeus sinensis Aphyocypris chinensis Acheilognathus tonkinensis Mylopharyngodon piceus Onychostoma macrolepis Zacco platypus Pseudogyrinocheilus prochilus Distoechodon tumirostris Pseudorasbora parva Gobiobotia tungi Anabarilius duoyiheensis Sinilabeo rendahli Gobiobotia guilingensis Tinca tinca |
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| 描述信息 | We assembled de novo high-quality reference genomes of twenty-one cyprinid fishes from five subfamilies using HiFi PacBio long reads. Combined with the high-throughput chromosome conformation capture (Hi-C) reads and specific subgenome markers, we also generated three subgenome-resolved allotetraploids from three tribes. | ||||||||||||||||
| 样品范围 | Multispecies | ||||||||||||||||
| 发布日期 | 2023-10-31 | ||||||||||||||||
| 出版信息 |
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| 项目资金来源 |
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| 提交者 | HuaHao Zhang (zhanghuahao_0824@126.com) | ||||||||||||||||
| 提交单位 | Jiujiang University | ||||||||||||||||
| 提交日期 | 2022-11-03 |