| Accession | PRJCA012952 | ||||||||||||||||
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| Title | Origin and subgenome evolution of three independent allopolyploid cyprinid fishes | ||||||||||||||||
| Relevance | Evolution | ||||||||||||||||
| Data types |
Epigenomics
Transcriptome or Gene expression Genome sequencing and assembly Raw sequence reads HiC data |
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| Organisms |
Scaphiodonichthys acanthopterus
Spinibarbus sinensis Ladislavia taczanowskii Luciobarbus capito Procypris rabaudi Crossocheilus oblongus Belligobio pengxianensis Squaliobarbus curriculus Rhodeus sinensis Aphyocypris chinensis Acheilognathus tonkinensis Mylopharyngodon piceus Onychostoma macrolepis Zacco platypus Pseudogyrinocheilus prochilus Distoechodon tumirostris Pseudorasbora parva Gobiobotia tungi Anabarilius duoyiheensis Sinilabeo rendahli Gobiobotia guilingensis Tinca tinca |
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| Description | We assembled de novo high-quality reference genomes of twenty-one cyprinid fishes from five subfamilies using HiFi PacBio long reads. Combined with the high-throughput chromosome conformation capture (Hi-C) reads and specific subgenome markers, we also generated three subgenome-resolved allotetraploids from three tribes. | ||||||||||||||||
| Sample scope | Multispecies | ||||||||||||||||
| Release date | 2023-10-31 | ||||||||||||||||
| Grants |
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| Submitter | HuaHao Zhang (zhanghuahao_0824@126.com) | ||||||||||||||||
| Organization | Jiujiang University | ||||||||||||||||
| Submission date | 2022-11-03 |