项目编号

PRJCA016978

项目标题

Inheritance of acquired adaptive cold tolerance in rice through DNA methylation

涉及领域

Epigenetics

数据类型

Whole genome sequencing
Epigenomics
Transcriptome or Gene expression

物种名称

Oryza sativa

描述信息

Epigenetic pathways could provide a mechanistic explanation for the inheritance of acquired characteristics (IAC). However, epigenetic alterations that endow adaptive hereditary traits have rarely been observed. Here, we identified an epiallele conferring acquired and heritable cold tolerance, an adaptive trait enabling the northward spread of rice. We subjected cold-sensitive rice to multigenerational cold stress and identified a line with acquired stable inheritance of cold tolerance. DNA hypomethylation variation in the Acquired Cold Tolerance 1 (ACT1) gene rendered its expression insensitive to cold. Raw data used are deposited here.

样品范围

Monoisolate

发布日期

2023-05-25

项目资金来源

机构	项目类型	授权项目ID	授权项目名称
Chinese Academy of Sciences (CAS)	Strategic Priority Research Program of Chinese Academy of Sciences (CAS)	XDA28030100

项目相关网站链接

项目相关网站链接	网站信息描述
https://doi.org/10.57760/sciencedb.08245	Genome assembly and annotation of KD8-4C and KD8-4N

提交者

Hui Liu (liuhui1@mail.kib.ac.cn)

提交单位

Kunming Institute of Botany, Chinese Academy of Sciences

提交日期

2023-05-14

项目包含数据信息

资源名称	描述
BioSample (48) show	-
SAMC3445343	Bis-Seq of panicles from KD8-4N at booting stage, CMT3-RNAi-2, replication 2
SAMC3445342	Bis-Seq of panicles from KD8-4N at booting stage, CMT3-RNAi-2, replication 1
SAMC3445341	Bis-Seq of panicles from KD8-4N at booting stage, CMT3-RNAi-1, replication 2
SAMC3445340	Bis-Seq of panicles from KD8-4N at booting stage, CMT3-RNAi-1, replication 1
SAMC3445339	Bis-Seq of panicles from KD8-4N at booting stage, MET1b-RNAi-2, replication 2
SAMC3445338	Bis-Seq of panicles from KD8-4N at booting stage, MET1b-RNAi-2, replication 1
SAMC3445337	Bis-Seq of panicles from KD8-4N at booting stage, MET1b-RNAi-1, replication 2
SAMC3445336	Bis-Seq of panicles from KD8-4N at booting stage, MET1b-RNAi-1, replication 1
SAMC3445335	Bis-Seq of panicles from KD8-4N at booting stage, control for RNAi lines, replication 2
SAMC3445334	Bis-Seq of panicles from KD8-4N at booting stage, control for RNAi lines, replication 1
SAMC3445333	Small RNA of KD8-4N (K38) subjected to 3-day cold stress, replication 2
SAMC3445332	Small RNA of KD8-4N (K38) subjected to 3-day cold stress, replication 1
SAMC3445331	Small RNA of KD8-4N (K38) subjected to 0-day cold stress, replication 2
SAMC3445330	Small RNA of KD8-4N (K38) subjected to 0-day cold stress, replication 1
SAMC3445329	Small RNA of KD8-4C (K26) subjected to 3-day cold stress, replication 2
SAMC3445328	Small RNA of KD8-4C (K26) subjected to 3-day cold stress, replication 1
SAMC3445327	Small RNA of KD8-4C (K26) subjected to 0-day cold stress, replication 2
SAMC3445326	Small RNA of KD8-4C (K26) subjected to 0-day cold stress, replication 1
SAMC3445325	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 3-day cold stress, replication 3
SAMC3445324	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 0-day cold stress, replication 3
SAMC3445323	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 3-day cold stress, replication 2
SAMC3445322	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 0-day cold stress, replication 2
SAMC3445321	RNA-Seq of panicles of KD8-4N subjected to 3-day cold stress, replication 3
SAMC3445320	RNA-Seq of panicles of KD8-4N subjected to 0-day cold stress, replication 3
SAMC3445319	RNA-Seq of panicles of KD8-4C subjected to 3-day cold stress, replication 3
SAMC3445318	RNA-Seq of panicles of KD8-4C subjected to 0-day cold stress, replication 3
SAMC3445317	RNA-Seq of panicles of KD8-4N subjected to 3-day cold stress, replication 2
SAMC3445316	RNA-Seq of panicles of KD8-4N subjected to 0-day cold stress, replication 2
SAMC3445315	RNA-Seq of panicles of KD8-4C subjected to 3-day cold stress, replication 2
SAMC3445314	RNA-Seq of panicles of KD8-4C subjected to 0-day cold stress, replication 2
SAMC1255775	Bis-Seq of panicles from KD8-4C at booting stage, replication 2
SAMC1255774	Bis-Seq of panicles from KD8-4C at booting stage, replication 1
SAMC1255773	Bis-Seq of panicles from KD8-4N at booting stage, replication 2
SAMC1255772	Bis-Seq of panicles from KD8-4N at booting stage, replication 1
SAMC1255771	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 5-day cold stress, replication 1
SAMC1255770	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 3-day cold stress, replication 1
SAMC1255769	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 1-day cold stress, replication 1
SAMC1255768	RNA-Seq of panicles of F1 of KD8-4N x KD8-4C subjected to 0-day cold stress, replication 1
SAMC1255767	RNA-Seq of panicles of KD8-4N subjected to 5-day cold stress, replication 1
SAMC1255766	RNA-Seq of panicles of KD8-4N subjected to 3-day cold stress, replication 1
SAMC1255765	RNA-Seq of panicles of KD8-4N subjected to 1-day cold stress, replication 1
SAMC1255764	RNA-Seq of panicles of KD8-4N subjected to 0-day cold stress, replication 1
SAMC1255763	RNA-Seq of panicles of KD8-4C subjected to 5-day cold stress, replication 1
SAMC1255762	RNA-Seq of panicles of KD8-4C subjected to 3-day cold stress, replication 1
SAMC1255761	RNA-Seq of panicles of KD8-4C subjected to 1-day cold stress, replication 1
SAMC1255760	RNA-Seq of panicles of KD8-4C subjected to 0-day cold stress, replication 1
SAMC1255759	Whole genome sequencing of KD8-4N (M445)
SAMC1255758	Whole genome sequencing of KD8-4C (M441)
GSA (2)	-
CRA015376	Inheritance of acquired adaptive cold tolerance in rice through DNA methylation
CRA011169	Inheritance of acquired adaptive cold tolerance in rice through DNA methylation