CRA011169 Information
Title: Inheritance of acquired adaptive cold tolerance in rice through DNA methylation
BioProject: PRJCA016978 /
Release date: 2023-05-26
Files: 82
File size: 1236.73 GB
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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX709091 Bisulfite sequencing of panicles of KD8-4C, rep2(E59) Oryza sativa Illumina NovaSeq 6000 SAMC1255775
Run accession Run alias Run data file information
CRR790197 Bisulfite sequencing of panicles of KD8-4C, rep2(E59)-RUN39 File: CRR790197_f1.fastq.gz
File: CRR790197_r2.fastq.gz
CRR790198 Bisulfite sequencing of panicles of KD8-4C, rep2(E59)-RUN40 File: CRR790198_f1.fastq.gz
File: CRR790198_r2.fastq.gz
CRR790199 Bisulfite sequencing of panicles of KD8-4C, rep2(E59)-RUN41 File: CRR790199_f1.fastq.gz
File: CRR790199_r2.fastq.gz
CRR790200 Bisulfite sequencing of panicles of KD8-4C, rep2(E59)-RUN42 File: CRR790200_f1.fastq.gz
File: CRR790200_r2.fastq.gz
CRX709090 Bisulfite sequencing of panicles of KD8-4C, rep1(E47) Oryza sativa Illumina NovaSeq 6000 SAMC1255774
Run accession Run alias Run data file information
CRR790193 Bisulfite sequencing of panicles of KD8-4C, rep1(E47)-RUN35 File: CRR790193_f1.fastq.gz
File: CRR790193_r2.fastq.gz
CRR790194 Bisulfite sequencing of panicles of KD8-4C, rep1(E47)-RUN36 File: CRR790194_f1.fastq.gz
File: CRR790194_r2.fastq.gz
CRR790195 Bisulfite sequencing of panicles of KD8-4C, rep1(E47)-RUN37 File: CRR790195_f1.fastq.gz
File: CRR790195_r2.fastq.gz
CRR790196 Bisulfite sequencing of panicles of KD8-4C, rep1(E47)-RUN38 File: CRR790196_f1.fastq.gz
File: CRR790196_r2.fastq.gz
CRX709089 Bisulfite sequencing of panicles of KD8-4N, rep2(E52) Oryza sativa Illumina NovaSeq 6000 SAMC1255773
Run accession Run alias Run data file information
CRR790189 Bisulfite sequencing of panicles of KD8-4N, rep2(E52)-RUN31 File: CRR790189_f1.fastq.gz
File: CRR790189_r2.fastq.gz
CRR790190 Bisulfite sequencing of panicles of KD8-4N, rep2(E52)-RUN32 File: CRR790190_f1.fastq.gz
File: CRR790190_r2.fastq.gz
CRR790191 Bisulfite sequencing of panicles of KD8-4N, rep2(E52)-RUN33 File: CRR790191_f1.fastq.gz
File: CRR790191_r2.fastq.gz
CRR790192 Bisulfite sequencing of panicles of KD8-4N, rep2(E52)-RUN34 File: CRR790192_f1.fastq.gz
File: CRR790192_r2.fastq.gz
CRX709088 Bisulfite sequencing of panicles of KD8-4N, rep1(E45) Oryza sativa Illumina NovaSeq 6000 SAMC1255772
Run accession Run alias Run data file information
CRR790185 Bisulfite sequencing of panicles of KD8-4N, rep1(E45)-RUN27 File: CRR790185_f1.fastq.gz
File: CRR790185_r2.fastq.gz
CRR790186 Bisulfite sequencing of panicles of KD8-4N, rep1(E45)-RUN28 File: CRR790186_f1.fastq.gz
File: CRR790186_r2.fastq.gz
CRR790187 Bisulfite sequencing of panicles of KD8-4N, rep1(E45)-RUN29 File: CRR790187_f1.fastq.gz
File: CRR790187_r2.fastq.gz
CRR790188 Bisulfite sequencing of panicles of KD8-4N, rep1(E45)-RUN30 File: CRR790188_f1.fastq.gz
File: CRR790188_r2.fastq.gz
CRX709087 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 5-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255771
Run accession Run alias Run data file information
CRR790184 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 5-day cold stress File: CRR790184_f1.fastq.gz
File: CRR790184_r2.fastq.gz
CRX709086 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 3-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255770
Run accession Run alias Run data file information
CRR790183 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 3-day cold stress File: CRR790183_f1.fastq.gz
File: CRR790183_r2.fastq.gz
CRX709085 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 1-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255769
Run accession Run alias Run data file information
CRR790182 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 1-day cold stress File: CRR790182_f1.fastq.gz
File: CRR790182_r2.fastq.gz
CRX709084 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 0-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255768
Run accession Run alias Run data file information
CRR790181 Panicle RNA-Seq of F1 (K7) of KD8-4N x KD8-4C subjected to 0-day cold stress File: CRR790181_f1.fastq.gz
File: CRR790181_r2.fastq.gz
CRX709083 Panicle RNA-Seq of KD8-4N (K38) subjected to 5-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255767
Run accession Run alias Run data file information
CRR790180 Panicle RNA-Seq of KD8-4N (K38) subjected to 5-day cold stress File: CRR790180_f1.fastq.gz
File: CRR790180_r2.fastq.gz
CRX709082 Panicle RNA-Seq of KD8-4N (K38) subjected to 3-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255766
Run accession Run alias Run data file information
CRR790179 Panicle RNA-Seq of KD8-4N (K38) subjected to 3-day cold stress File: CRR790179_f1.fastq.gz
File: CRR790179_r2.fastq.gz
CRX709081 Panicle RNA-Seq of KD8-4N (K38) subjected to 1-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255765
Run accession Run alias Run data file information
CRR790178 Panicle RNA-Seq of KD8-4N (K38) subjected to 1-day cold stress File: CRR790178_f1.fastq.gz
File: CRR790178_r2.fastq.gz
CRX709080 Panicle RNA-Seq of KD8-4N (K38) subjected to 0-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255764
Run accession Run alias Run data file information
CRR790177 Panicle RNA-Seq of KD8-4N (K38) subjected to 0-day cold stress File: CRR790177_f1.fastq.gz
File: CRR790177_r2.fastq.gz
CRX709079 Panicle RNA-Seq of KD8-4C (K26) subjected to 5-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255763
Run accession Run alias Run data file information
CRR790176 Panicle RNA-Seq of KD8-4C (K26) subjected to 5-day cold stress File: CRR790176_f1.fastq.gz
File: CRR790176_r2.fastq.gz
CRX709078 Panicle RNA-Seq of KD8-4C (K26) subjected to 3-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255762
Run accession Run alias Run data file information
CRR790175 Panicle RNA-Seq of KD8-4C (K26) subjected to 3-day cold stress File: CRR790175_f1.fastq.gz
File: CRR790175_r2.fastq.gz
CRX709077 Panicle RNA-Seq of KD8-4C (K26) subjected to 1-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255761
Run accession Run alias Run data file information
CRR790174 Panicle RNA-Seq of KD8-4C (K26) subjected to 1-day cold stress File: CRR790174_f1.fastq.gz
File: CRR790174_r2.fastq.gz
CRX709076 Panicle RNA-Seq of KD8-4C (K26) subjected to 0-day cold stress Oryza sativa Illumina NovaSeq 6000 SAMC1255760
Run accession Run alias Run data file information
CRR790173 Panicle RNA-Seq of KD8-4C (K26) subjected to 0-day cold stress File: CRR790173_f1.fastq.gz
File: CRR790173_r2.fastq.gz
CRX709075 NovaSeq sequencing of KD8-4N (M445) Oryza sativa Illumina NovaSeq 6000 SAMC1255759
Run accession Run alias Run data file information
CRR790168 NovaSeq sequencing of KD8-4N (M445) RUN10 File: CRR790168_f1.fq.gz
File: CRR790168_r2.fq.gz
CRR790169 NovaSeq sequencing of KD8-4N (M445) RUN11 File: CRR790169_f1.fq.gz
File: CRR790169_r2.fq.gz
CRR790170 NovaSeq sequencing of KD8-4N (M445) RUN12 File: CRR790170_f1.fq.gz
File: CRR790170_r2.fq.gz
CRR790171 NovaSeq sequencing of KD8-4N (M445) RUN13 File: CRR790171_f1.fq.gz
File: CRR790171_r2.fq.gz
CRR790172 NovaSeq sequencing of KD8-4N (M445) RUN14 File: CRR790172_f1.fastq.gz
File: CRR790172_r2.fastq.gz
CRX709074 ONT sequencing of KD8-4N (M445) Oryza sativa OXFORD_NANOPORE PromethION SAMC1255759
Run accession Run alias Run data file information
CRR790167 ONT sequencing of KD8-4N (M445) File: CRR790167.tar
CRX709073 NovaSeq sequencing of KD8-4C (M441) Oryza sativa Illumina NovaSeq 6000 SAMC1255758
Run accession Run alias Run data file information
CRR790160 NovaSeq sequencing of KD8-4C (M441) RUN2 File: CRR790160_f1.fq.gz
File: CRR790160_r2.fq.gz
CRR790161 NovaSeq sequencing of KD8-4C (M441) RUN3 File: CRR790161_f1.fq.gz
File: CRR790161_r2.fq.gz
CRR790162 NovaSeq sequencing of KD8-4C (M441) RUN4 File: CRR790162_f1.fq.gz
File: CRR790162_r2.fq.gz
CRR790163 NovaSeq sequencing of KD8-4C (M441) RUN5 File: CRR790163_f1.fq.gz
File: CRR790163_r2.fq.gz
CRR790164 NovaSeq sequencing of KD8-4C (M441) RUN6 File: CRR790164_f1.fastq.gz
File: CRR790164_r2.fastq.gz
CRR790165 NovaSeq sequencing of KD8-4C (M441) RUN7 File: CRR790165_f1.fq.gz
File: CRR790165_r2.fq.gz
CRR790166 NovaSeq sequencing of KD8-4C (M441) RUN8 File: CRR790166_f1.fq.gz
File: CRR790166_r2.fq.gz
CRX709072 ONT sequencing of KD8-4C (M441) Oryza sativa OXFORD_NANOPORE PromethION SAMC1255758
Run accession Run alias Run data file information
CRR790159 ONT sequencing of KD8-4C (M441) File: CRR790159.tar
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Submitter:Hui Liu (liuhui1@mail.kib.ac.cn)
Organization:Kunming Institute of Botany, Chinese Academy of Sciences
Date submitted:2023-05-21