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Accession PRJCA017338
Title Cabbage pan genome
Relevance Agricultural
Data types Whole genome sequencing
Epigenomics
Transcriptome or Gene expression
Genome sequencing and assembly
Raw sequence reads
Organisms Brassica oleracea var. botrytis
Brassica oleracea var. italica
Brassica oleracea var. palmifolia
Brassica oleracea
Brassica oleracea var. viridis
Brassica oleracea var. gongylodes
Brassica oleracea var. capitata
Brassica oleracea var. gemmifera
Brassica oleracea var. ramosa
Brassica oleracea var. alboglabra
Brassica oleracea var. costata
Description Cabbage pan genome assembly and multi-omics sequencing data.
Sample scope Multispecies
Release date 2023-11-24
Publication
PubMed ID Article title Journal name DOI Year
38351383 Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea Nature Genetics 10.1038/s41588-024-01655-4 2024
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) 31972411
National Natural Science Foundation of China (NSFC) 31722048
National Natural Science Foundation of China (NSFC) 31630068
Submitter Xing Li (xzdlixing@126.com)
Organization Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Submission date 2023-05-29

Project Data

Resource name Description
BioSample (431)  show -
GSA (5) -
CRA011438 The illumina sequencing data of 415 Brassica oleracea accessions
CRA011563 The transcriptome data of 223 Brassica oleracea accessions
CRA013119 Third generation long reads data for Brassica oleracea genomes
CRA013409 Hi-C and Bionano data for Brassica oleracea genomes
CRA012485 The methylation data of 16 Brassica oleracea accessions