项目编号 PRJCA017338
项目标题 Cabbage pan genome
涉及领域 Agricultural
数据类型 Whole genome sequencing
Epigenomics
Transcriptome or Gene expression
Genome sequencing and assembly
Raw sequence reads
物种名称 Brassica oleracea var. botrytis
Brassica oleracea var. italica
Brassica oleracea var. palmifolia
Brassica oleracea
Brassica oleracea var. viridis
Brassica oleracea var. gongylodes
Brassica oleracea var. capitata
Brassica oleracea var. gemmifera
Brassica oleracea var. ramosa
Brassica oleracea var. alboglabra
Brassica oleracea var. costata
描述信息 Cabbage pan genome assembly and multi-omics sequencing data.
样品范围 Multispecies
发布日期 2023-11-24
出版信息
PubMed ID 文章标题 杂志名称 Doi 发表年份
38351383 Large-scale gene expression alterations introduced by structural variation drive morphotype diversification in Brassica oleracea Nature Genetics 10.1038/s41588-024-01655-4 2024
项目资金来源
机构 项目类型 授权项目ID 授权项目名称
National Natural Science Foundation of China (NSFC) 31972411
National Natural Science Foundation of China (NSFC) 31722048
National Natural Science Foundation of China (NSFC) 31630068
提交者 Xing Li (xzdlixing@126.com)
提交单位 Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
提交日期 2023-05-29

项目包含数据信息

资源名称 描述
BioSample (431)  show -
GSA (5) -
CRA011438 The illumina sequencing data of 415 Brassica oleracea accessions
CRA011563 The transcriptome data of 223 Brassica oleracea accessions
CRA013119 Third generation long reads data for Brassica oleracea genomes
CRA013409 Hi-C and Bionano data for Brassica oleracea genomes
CRA012485 The methylation data of 16 Brassica oleracea accessions