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CRA013409 Information
Title: Hi-C and Bionano data for Brassica oleracea genomes
BioProject: PRJCA017338 /
Release date: 2023-11-24
Files: 37
File size: 440.51 GB
Publication
Journal name
Nature Genetics
Year
2024
DOI
10.1038/s41588-024-01655-4
PubMed ID
38351383

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Experiments & Runs
Experiment accession Title Taxon name Platform Sample accession
CRX849347 T27_Bionano Brassica oleracea var. gongylodes BioNano SAPHYR SAMC1288044
Run accession Run alias Run data file information
CRR937960 T27_Bionano File: CRR937960.bnx.gz
CRX849346 T26_Bionano Brassica oleracea var. viridis BioNano SAPHYR SAMC1288043
Run accession Run alias Run data file information
CRR937959 T26_Bionano File: CRR937959.bnx.gz
CRX849345 T25_Bionano Brassica oleracea var. botrytis BioNano SAPHYR SAMC1288042
Run accession Run alias Run data file information
CRR937958 T25_Bionano File: CRR937958.bnx.gz
CRX849344 T24_Bionano Brassica oleracea var. italica BioNano SAPHYR SAMC1288041
Run accession Run alias Run data file information
CRR937957 T24_Bionano File: CRR937957.bnx.gz
CRX849343 T19_HiC Brassica oleracea var. alboglabra Illumina HiSeq 2000 SAMC1288040
Run accession Run alias Run data file information
CRR937956 T19_HiC File: CRR937956_f1.fastq.gz
File: CRR937956_r2.fastq.gz
CRX849342 T18_HiC Brassica oleracea var. viridis Illumina HiSeq 2000 SAMC1287941
Run accession Run alias Run data file information
CRR937955 T18_HiC File: CRR937955_f1.fastq.gz
File: CRR937955_r2.fastq.gz
CRX849341 T17_HiC Brassica oleracea var. viridis Illumina HiSeq 2000 SAMC1287912
Run accession Run alias Run data file information
CRR937954 T17_HiC File: CRR937954_f1.fastq.gz
File: CRR937954_r2.fastq.gz
CRX849340 T16_HiC Brassica oleracea var. ramosa Illumina HiSeq 2000 SAMC1288039
Run accession Run alias Run data file information
CRR937953 T16_HiC File: CRR937953_f1.fastq.gz
File: CRR937953_r2.fastq.gz
CRX849339 T15_HiC Brassica oleracea var. costata Illumina HiSeq 2000 SAMC1288038
Run accession Run alias Run data file information
CRR937952 T15_HiC File: CRR937952_f1.fastq.gz
File: CRR937952_r2.fastq.gz
CRX849338 T14_HiC Brassica oleracea var. viridis Illumina HiSeq 2000 SAMC1287944
Run accession Run alias Run data file information
CRR937951 T14_HiC File: CRR937951_f1.fastq.gz
File: CRR937951_r2.fastq.gz
CRX849337 T13_HiC Brassica oleracea var. costata Illumina HiSeq 2000 SAMC1288037
Run accession Run alias Run data file information
CRR937950 T13_HiC File: CRR937950_f1.fastq.gz
File: CRR937950_r2.fastq.gz
CRX849336 T12_HiC Brassica oleracea Illumina HiSeq 2000 SAMC1287904
Run accession Run alias Run data file information
CRR937949 T12_HiC File: CRR937949_f1.fastq.gz
File: CRR937949_r2.fastq.gz
CRX849335 T11_HiC Brassica oleracea var. alboglabra Illumina HiSeq 2000 SAMC1288036
Run accession Run alias Run data file information
CRR937948 T11_HiC File: CRR937948_f1.fastq.gz
File: CRR937948_r2.fastq.gz
CRX849334 T10_HiC Brassica oleracea Illumina HiSeq 2000 SAMC1287907
Run accession Run alias Run data file information
CRR937947 T10_HiC File: CRR937947_f1.fastq.gz
File: CRR937947_r2.fastq.gz
CRX849333 T09_HiC Brassica oleracea Illumina HiSeq 2000 SAMC1287908
Run accession Run alias Run data file information
CRR937946 T09_HiC File: CRR937946_f1.fastq.gz
File: CRR937946_r2.fastq.gz
CRX849332 T08_HiC Brassica oleracea var. gemmifera Illumina HiSeq 2000 SAMC1287918
Run accession Run alias Run data file information
CRR937945 T08_HiC File: CRR937945_f1.fastq.gz
File: CRR937945_r2.fastq.gz
CRX849331 T07_HiC Brassica oleracea var. gongylodes Illumina HiSeq 2000 SAMC1288035
Run accession Run alias Run data file information
CRR937944 T07_HiC File: CRR937944_f1.fastq.gz
File: CRR937944_r2.fastq.gz
CRX849330 T06_Bionano Brassica oleracea var. italica BioNano SAPHYR SAMC1288034
Run accession Run alias Run data file information
CRR937943 T06_Bionano File: CRR937943.bnx.gz
CRX849329 T04_HiC Brassica oleracea var. capitata Illumina HiSeq 2000 SAMC1288033
Run accession Run alias Run data file information
CRR937942 T04_HiC File: CRR937942_f1.fastq.gz
File: CRR937942_r2.fastq.gz
CRX849328 T03_HiC Brassica oleracea var. capitata Illumina HiSeq 2000 SAMC1287855
Run accession Run alias Run data file information
CRR937941 T03_HiC File: CRR937941_f1.fastq.gz
File: CRR937941_r2.fastq.gz
Submitter:Xing Li (xzdlixing@126.com)
Organization:Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Date submitted:2023-11-10