Accession SAMC1714803
Accession in Other Database GSA-Human: HRS192203
Sample name ATAC_SOX15KO.D4.rep2
Title ATAC_SOX15KO.D4.rep2
Sample type Human sample
Organism Homo sapiens
Description ATAC-seq for Differentiating cells (SOX15 -/-)
Attributes
Isolate not collected
Age
Biomaterial provider Southern Medical University (SMU), Xiao-yang Zhao Lab
Sex not applicable
Tissue pluripotent stem cell
Disease
Cell line
Cell subtype
Cell type
Culture collection
Development stage
Disease stage
Ethnicity
Health State
Karyotype
Phenotype
Population
Race
Type
Treatment
Collection date 2018-01-01
Custom attributes
Release date 2021-06-17
BioProject Accession PRJCA005395
Submitter xinyan  yang  (zhaoxiaoyang@smu.edu.cn)
Organization Southern Medical University
Submission date 2023-06-18

Sample Data

Resource name Description
GSA-Human (1) -
HRA000925  (Open Access) In vitro induction of human primordial germ cell-like cells (hPGCLCs) provides an ideal platform to recapitulate hPGC development. However, the detailed molecular mechanisms regulating the induction of hPGCLCs remain largely uncharacterized. Here, we profiled the chromatin accessibility and transcriptome dynamics throughout the process of hPGCLC induction. Genetic ablation of SOX15 indicated the crucial roles of SOX15 in the maintenance of hPGCLCs. Mechanistically, SOX15 exerted its roles via suppressing somatic gene expression and sustaining latent pluripotency. Finally, a stepwise switch of OCT4/SOX2, OCT4/SOX17, and OCT4/SOX15 binding motifs were found to be enriched in closed-to-open regions of human embryonic stem cells, and early- and late-stage hPGCLCs, respectively. Collectively, our data characterized the chromatin accessibility and transcriptome landscapes throughout hPGCLC induction and defined the SOX15-mediated regulatory networks underlying this process.
Related samples
Samples (1)