SingleMarker - Cell Taxonomy - CNCB-NGDC

Car7

Car7

Species	Gene alias	ENTREZ ID	Ensembl ID	UniProt ID	Pfam ID	Orthologs
Mus musculus	AV343731,Ca7	12354	ENSMUSG00000031883	G3XA26 Q9ERQ8 Q3UND9	PF00194	CA7 (766, Homo sapiens)

Car7 is associated with 1 cell type in 1 condition and 1 tissue, supported by 1 publication.
The relevant cell types for Car7 are ranked by evaluation of supported literature, expression enrichment and conservation.

Show value

	No. of publications >=	log2FC The median log2 fold-change of expression (FDR < 0.05) in a cell cluster to that in all other cells among the available scRNA-seq samples >=	Highly expressed ratio Number of samples in which genes are more highly expressed in this cell type compared to other cell types (log2FC > 0.25, FDR < 0.05) divided by number of total samples for the cell type >=	Specificity score The median cell specificity score (calculated by Jensen-Shannon divergence score, ranging from 0 to 1) among available scRNA-seq samples >=	Conservation score Number of ortholog genes which are also reported as cell markers for this cell type in other species >=
Type I spiral ganglion neuron	(1)	-	-	-	-

Showing 1 to 1 of 1 entries

This panel shows the cell types of the cell marker in various tissues. Fisher’s exact test is performed to test if this cell marker is specifically associated with some cell type by publication number: *** for < 0.001, ** for [0.001, 0.01) and * for [0.01, 0.05).

Tissue

Search:

Cell Taxonomy ID	Cell type	Species	Tissue	Condition	Source	PMID

CT:00001935	Type I spiral ganglion neuron	Mus musculus	Brain	Physiology	CellMarker	30078709

Showing 1 to 1 of 1 entries

Cell marker expression enrichment

This panel shows the top cell types in which this marker is highly specifically expressed (with significant high fold change between this cell type and others in relevant scRNA-seq samples; FDR < 0.05).

log2FC greater than

Rank by highly expressed ratio

Cell type	No. of total samples (E)	No. of highly expressed samples (HE, FDR<0.05)	Highly expressed ratio (HE/E)

Species	Sample	Condition	Cell type	log2FC	Pct.cell type The expression percentage of this gene in this cell type	Pct.others The expression percentage of this gene in other cell types	P value	FDR

Species	Sample	Condition	Cell type	Specificity score Jensen-Shannon (JS) divergence score (0-1) is calculated to quantify the cell type specificity of one cell marker (Cabili MN et al., 2011 ).