ggaS0005002568204

Detail information of ggaS0005002568204

1.General Information

SNP ID:	ggaS0005002568204
Organism:	Gallus gallus
Individual:	104S_L7_I029

2.Allele information

Platform:	SOLEXA
Method:	sequence
SNP Class:	SNP
Genotype:	T

3.Reference Map information

Chrom	Position	Reference	104S_L7_I029
chr25	5118	C	T

4.Gene information

Var ID	Gene ID	Transcript ID	Gene Symbol	Variant Effect	Biotype	cDNA Position	Allele Change	Protein ID	Protein Position	Residue Change
ggaS0005002568204	ENSGALG00000009011		SMG5	intron_variant			=>			=>

5.Individual Genotype

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Individual	Genotype
100S	Y
101S_L1_I028	T
102S_L3_I037	Y
103S	T
105S_L3_I039	Y
106S_L6_I030	T
107S_L2_I031	Y
108S_L6_I032	Y
109S_L5_I033	Y
10S_L1_I052	T
110S_L4_I034	T
111S_L3_I047	Y
113S_L1_I036	T
114S_L3_I037	C
116S_L6_I038	C
117S_L2_I039	T
118S_L4_I040	T
119S_L3_I041	T
11S	C
120S_L1_I041	C
121S_L3_I042	C
123S_L4_I044	T
124S_L2_I048	C
125S_L3_I050	C
126S_L3_I051	Y
127S_L2_I045	C
128S_L1_I042	Y
129S_L3_I043	T
12S_L4_I011	T
130S_L4_I044	Y
131S_L2_I045	T
132S_L2_I046	Y
133S_L8_I046	T
134S_L2_I047	Y
135S_L3_I048	T
13S_L7_I012	T
15S_L6_I022	Y
16S_L5_I023	C
17S_L3_I024	Y
18833	Y
18S_L7_I025	C
19297	C
19912	T
19S_L4_I026	C
1S	Y
20736	Y
20S_L7_I027	Y
21S_L6_I028	C
22S_L6_I029	C
23S_L2_I030	T
24S_L4_I031	Y
25S_L3_I032	C
27S_L4_I034	C
29S_L3_I036	C
2S	Y
30S_L2_I037	Y
31S_L3_I038	Y
32S_L1_I039	Y
33S	Y
35S_L5_I041	C
36S_L5_I042	T
37S_L2_I043	T
38S_L6_I044	C
39S_L6_I053	Y
3S_L4_I003	T
40S_L2_I054	Y
41S_L5_I045	C
43S	C
44S_L4_I001	Y
45S_L2_I002	C
46S_L4_I003	C
48S_L1_I004	T
49S_L1_I005	Y
4S_L4_I004	T
50S_L1_I047	Y
51S_L6_I048	C
52S_L2_I050	Y
53S_L2_I006	Y
54S_L2_I007	C
55S_L1_I008	C
56S_L1_I010	T
57S_L3_I046	T
58S_L4_I051	T
59S_L5_I052	T
60S_L5_I053	C
61S_L8_I054	Y
62S_L8_I055	T
63S_L5_I056	T
64S_L4_I001	T
65S_L5_I002	C
66S_L2_I003	C
67S_L1_I011	Y
68S_L3_I012	Y
69S	T
6S	Y
70S	Y
71S_L3_I023	C
72S_L1_I024	Y
73S_L1_I025	T
74S_L4_I026	C
75S_L3_I027	T
77S_L4_I029	C
78S_L4_I030	C
79S_L2_I031	C
7S_L4_I007	T
80S_L3_I004	T
81S_L1_I005	C
82S	C
83S_L3_I033	Y
84S_L5_I006	T
85S_L5_I007	C
86S_L5_I008	T
87S_L5_I010	C
88S_L4_I011	Y
89S_L6_I012	T
91S_L4_I022	T
92S_L5_I023	C
93S_L7_I024	Y
95S_L8_I025	T
96S_L4_I026	T
97S_L8_I027	Y
9S	T
A1	Y
A10	Y
A12	T
A14	Y
A3	T
A8	T
BKL2	C
BLO1	T
BLO15	T
BLO2	T
BOJA2	T
BYW3_L3_I033	T
GVF	T
India1	T
India11	T
India15	T
India17	Y
India19	Y
India21	C
India23	Y
India25	T
India27	T
India29	Y
India31	Y
India33	C
India35	Y
India37	C
India39	Y
India41	C
India43	Y
India45	C
India47	Y
India5	Y
India51	C
India55	C
India57	C
India59	T
India61	Y
India7	Y
India9	Y
L2	T
N1	Y
N11	Y
N13	T
N18	Y
N3	T
N5	T
N7	Y
N8	Y
S-f1_L4_I106	Y
S-f2_I107	Y
S-f3_I108	C
S-f4_L4_I109	Y
S-m1_I101	Y
S-m2_I102	Y
S-m3_I103	Y
S-m4_L2_I104	T
S-m5_I105	Y
S6	Y
SAMN02486156	T
SAMN02486157	T
SAMN02486158	T
SAMN02486159	T
SAMN02486160	Y
SAMN02486161	T
SAMN02486162	Y
SAMN02486163	T
SAMN02486164	T
SAMN02486165	C
SAMN02486166	C
SAMN02486167	C
Silkia	Y
T2	T
T3	T
T5	Y
TD1	T
TD12	Y
TD15	Y
TD22	Y
TD27	C
TD30	C
TD6	C
TD9	Y
Tibet	C
Xcelris_101	T
Xcelris_10A	T
Xcelris_10B	C
Xcelris_112	T
Xcelris_114	T
Xcelris_11B	T
Xcelris_12	Y
Xcelris_127	T
Xcelris_128	T
Xcelris_129	T
Xcelris_12A	T
Xcelris_13	T
Xcelris_14	Y
Xcelris_141	T
Xcelris_143	C
Xcelris_144	T
Xcelris_14B	T
Xcelris_174	T
Xcelris_175	T
Xcelris_176	T
Xcelris_1A	T
Xcelris_1B	C
Xcelris_219	Y
Xcelris_221	T
Xcelris_222	T
Xcelris_224	C
Xcelris_226	C
Xcelris_227	Y
Xcelris_275	T
Xcelris_278	C
Xcelris_2B	T
Xcelris_331	Y
Xcelris_332	T
Xcelris_333	Y
Xcelris_335	Y
Xcelris_340	Y
Xcelris_378	T
Xcelris_379	C
Xcelris_380	Y
Xcelris_381	T
Xcelris_382	T
Xcelris_383	C
Xcelris_384	C
Xcelris_385	T
Xcelris_392	T
Xcelris_44	C
Xcelris_6A	T
Xcelris_77	Y
Xcelris_84	Y
Xcelris_8A	Y
Xcelris_8B	T
Xcelris_90	C
Xcelris_97	T
Xcelris_98	T
Xcelris_MT-48	T
Xcelris_MT-6	T
Xcelris_MT-99	T
Y1-f1_L5_I119	C
Y1-f2_L6_I121	T
Y1-f3_L7_I101	T
Y1-m1_L6_I120	Y
Y1-m2_L4_I122	T
Y1-m3_L7_I123	T
Y1-m4_I124	C
Y1-m5_L7_I102	T
YPt565	C
YPt601	T
YPt604	C
YPt609	Y
YPt610	C
YPt637	Y
YPt641	Y
YPt648	Y
You1	T
You3_L7_I1000005	T
Ypt566	Y
Ypt567	T
Ypt568	T
Ypt569	T
Ypt570	Y
Ypt571	Y
Ypt572	Y
Ypt573	C
Ypt574	Y
Ypt575	T
Ypt576	Y
Ypt577	Y
Ypt578	T
Ypt579	C
Ypt580	Y
Ypt581	T
Ypt582	T
Ypt583	T
Ypt584	T
Ypt585	Y
Ypt586	T
Ypt587	Y
Ypt588	T
Ypt589	T
Ypt590	T
Ypt591	Y
Ypt592	Y
Ypt593	Y
Ypt594	T
Ypt595	Y
Ypt596	T
Ypt597	T
Ypt598	Y
Ypt599	T
Ypt600	T
Ypt602	C
Ypt603	T
Ypt606	Y
Ypt607	Y
Ypt608	C
Ypt622	C
Ypt623	T
Ypt624	T
Ypt626	T
Ypt638	C
Ypt640	Y
Ypt642	T
Ypt643	C
Ypt645	Y
Ypt646	Y
Ypt647	Y
Yt516	T
Yt517	Y
Yt518	T
Yt519	T
Yt520	Y
Yt521	Y
Yt522	T
Yt523	Y
Yt524	Y
Yt525	T
Yt526	Y
Yt527	T
Yt528	T
Yt529	Y
Yt530	Y
Yt531	Y
Yt536	C
Yt538	C
Yt539	Y
Yt540	C
ZJ1	T
ZJ2	T
ZJ3	Y
ZJ4	T
india3	T
india49	C
production	Y
yp914ypt	C
ypt169_L3_I011	T
ypt171_L2_I021	T
ypt173_L2_I022	C
ypt175_L2_I023	C
ypt2041_L6_I002	C
ypt2043_L1_I037	Y
ypt2051_L3_I003	T
ypt2053_L6_I004	T
ypt2063_L6_I005	T
ypt2069_L6_I006	T
ypt2071_L1_I038	T
ypt2082	T
ypt2086	Y
ypt2087	Y
ypt2091	C
ypt2092	C
ypt2093	T
ypt2094	Y
ypt2095	T
ypt2098	T
ypt2100	Y
ypt2101	C
ypt2102	T
ypt2103	Y
ypt2105	Y
ypt2106	Y
ypt2107	C
ypt2108	T
ypt2109	T
ypt2110	Y
ypt2111	C
ypt2112	T
ypt2114	T
ypt2115	C
ypt2116	T
ypt2118	Y
ypt2119	T
ypt2120	Y
ypt2121	Y
ypt2122	T
ypt2124_L4_I052	C
ypt2126_L3_I053	T
ypt2127_L1_I036	C
ypt2144_L6_I055	T
ypt2145_L6_I056	Y
ypt2146_L6_I001	T
ypt2163	T
ypt2164	Y
ypt2165	Y
ypt2166	Y
ypt2167	Y
ypt2168	T
ypt2169	T
ypt2170	Y
ypt2171	C
ypt2172	C
ypt2173	T
ypt2174	T
ypt2175	T
ypt2176	T
ypt2177	C
ypt2178	T
ypt217_L2_I024	Y
ypt2184	T
ypt2185	T
ypt2186	Y
ypt2187	Y
ypt2189	C
ypt2190	T
ypt2191	Y
ypt219_L3_I025	Y
ypt2200	T
ypt2201	T
ypt2209	T
ypt2214	T
ypt2215	Y
ypt2216	Y
ypt2217	Y
ypt2218	C
ypt2219	Y
ypt221_L3_I042	Y
ypt2220	T
ypt2221	Y
ypt2222	T
ypt2437	Y
ypt2438	T
ypt2439	Y
ypt2440	Y
ypt2441	Y
ypt2442	T
ypt2443	T
ypt2444	Y
ypt2446	T
ypt2447	C
ypt2448	C
ypt2449	T
ypt2454	T
ypt2459	T
ypt2468	C
ypt2496	C
ypt2497	C
ypt2499	T
ypt2500	C
ypt2503	C
ypt2504	Y
ypt2507	C
ypt2512	Y
ypt2516	T
ypt2521	T
ypt2523	Y
ypt2534	T
ypt2541	Y
ypt2543	T
ypt2544	Y
ypt2545	T
ypt2546	T
ypt2552	Y
ypt2562	C
ypt2563	Y
ypt2569	Y
ypt2570	C
ypt2571	C
ypt2572	T
ypt2573	C
ypt2574	Y
ypt2575	Y
ypt2579	Y
ypt258_L3_I028	C
ypt2598	C
ypt259_L2_I029	T
ypt2601	Y
ypt2606	C
ypt2615	C
ypt2623	C
ypt2624	Y
ypt2625	Y
ypt2627	Y
ypt2628	Y
ypt2629	Y
ypt262_L3_I030	C
ypt2630	T
ypt2636	T
ypt2638	C
ypt263_L3_I031	Y
ypt2640	T
ypt2641	Y
ypt2643	C
ypt2646	C
ypt264_L3_I032	Y
ypt2650	C
ypt2653	C
ypt2657	T
ypt2658	Y
ypt2661	T
ypt2664	Y
ypt2665	C
ypt2669	Y
ypt2670	Y
ypt2671	C
ypt2672	C
ypt2673	T
ypt2678	T
ypt2706	T
ypt2722	T
ypt2729	C
ypt2733	Y
ypt2739	T
ypt2740	T
ypt2745	T
ypt2746	C
ypt2760	C
ypt2761	Y
ypt2765	Y
ypt2766	T
ypt2775	Y
ypt2780	Y
ypt2781	C
ypt2782	Y
ypt2783	T
ypt2784	C
ypt2785	T
ypt2787	C
ypt2788	C
ypt2789	C
ypt2790	T
ypt2791	T
ypt2792	C
ypt2799	C
ypt2800	Y
ypt2808	T
ypt2810	C
ypt2812	T
ypt2813	C
ypt2814	Y
ypt2815	T
ypt2817	T
ypt2819	C
ypt2821	Y
ypt2822	T
ypt2823	T
ypt2824	Y
ypt2827	T
ypt2828	Y
ypt2831	Y
ypt2832	T
ypt2842	Y
ypt2843	T
ypt2849	T
ypt2859	C
ypt2862	T
ypt2870	T
ypt2871	T
ypt2888	T
ypt2889	T
ypt2891_L3_I041	T
ypt2892	T
ypt2893_L3_I025	T
ypt2895_L3_I026	T
ypt2902	Y
ypt2909	Y
ypt2910	C
ypt2911	Y
ypt2912	T
ypt2918	T
ypt2929	Y
ypt2930	Y
ypt3001	C
ypt3002	Y
ypt3003	C
ypt3004	Y
ypt3005	C
ypt3006	Y
ypt3007	C
ypt3008	Y
ypt3009	Y
ypt3010	C
ypt3011	C
ypt3012	C
ypt3016	T
ypt3017	Y
ypt3028	Y
ypt3038	Y
ypt3040	T
ypt3041	Y
ypt3042	Y
ypt3043	T
ypt3044	Y
ypt3045	T
ypt3046	T
ypt3047	Y
ypt3050	Y
ypt3051	Y
ypt3052	Y
ypt3061	C
ypt3069	Y
ypt3072	Y
ypt3133	Y
ypt3134	Y
ypt3135	T
ypt3136	Y
ypt3137	Y
ypt3138	T
ypt3139	T
ypt3140	T
ypt3141	T
ypt3142	Y
ypt3143	T
ypt3144_L3_I039	Y
ypt3145	T
ypt3146	T
ypt3149_L2_I034	C
ypt3150_L8_I023	C
ypt3159_L6_I035	C
ypt3160_L8_I024	Y
ypt3162_L6_I036	T
ypt3179_L8_I025	T
ypt3180	Y
ypt3181_L7_I038	T
ypt3182_L1_I039	Y
ypt3189_L1_I040	Y
ypt3190_L8_I026	Y
ypt3191_L2_I041	C
ypt3193_L1_I027	C
ypt3195_L1_I042	C
ypt3196_L2_I043	Y
ypt3197_L1_I044	C
ypt3204_L7_I046	T
ypt3207_L6_I050	T
ypt3210_L6_I051	C
ypt3211_L6_I052	T
ypt3213_L8_I029	T
ypt3219_L1_I030	T
ypt3220_L1_I031	Y
ypt3222_L1_I033	T
ypt3224_L8_I043	T
ypt3225_L2_I053	T
ypt3226_L3_I044	T
ypt3228-7_L1_I034	T
ypt3239_L1_I035	Y
ypt3240_L6_I054	T
ypt3243_L8_I047	C
ypt3245	T
ypt3247_L6_I051	T
ypt3257_L1_I056	T
ypt3258_L3_I001	T
ypt3259_L6_I002	T
ypt3260_L6_I003	T
ypt3261_L7_I004	C
ypt3262_L7_I005	Y
ypt3269_L7_I006	T
ypt3270_L1_I007	T
ypt3271_L7_I008	C
ypt3272_L7_I010	C
ypt3274A_L7_I011	Y
ypt3275_L1_I012	T
ypt3277_L6_I027	C
ypt50_L2_I030	T
ypt53_L2_I032	Y
ypt55_L1_I033	T
ypt890	Y
ypt891	Y
ypt898	Y
ypt902_L1_I053	T
ypt903_L2_I054	C
ypt904_L4_I055	Y
ypt905_L6_I056	T
ypt906_L3_I001	T
ypt907_L6_I002	C
ypt908_L1_I003	C
ypt909_L5_I004	T
ypt910_L3_I005	T
ypt912	C
ypt920_L5_I010	T
ypt923_L2_I051	Y
ypt925_L2_I022	Y
ypt926_L2_I023	Y
ypt928	T
ypt929	C
ypt930	T
ypt931	T
ypt936	T
ypt937	T
ypt940_L4_I026	T
ypt941_L5_I027	C
ypt942_L7_I028	T
ypt943	T
ypt944_L3_I030	Y
ypt945_L4_I031	T
ypt946_L4_I032	T
ypt947_L5_I033	C
ypt948_L2_I034	T
ypt949_L3_I035	C
ypt950_L5_I036	T
ypt951	C
ypt952	Y
ypt953	C
ypt954	Y
ypt955	Y
ypt956x	Y
ypt957	T
ypt958	T
ypt959	Y
ypt960	T
ypt961	T
ypt962	T
ypt963	Y
ypt964	Y
ypt965	Y
ypt966	C
ypt971	Y
ypt972x	T
ypt973_L4_I037	Y
ypt974	Y
ypt975_L8_I039	T
ypt976_L7_I040	C
ypt977_L2_I041	Y
ypt978_L2_I052	T
ypt979_L6_I042	T
ypt980_L3_I043	T
ypt981_L2_I044	T
ypt982_L4_I045	Y
ypt984	T
yptwj	Y
147209	T
147830	T
GLF_denovo	T
Gallus_Sonneriatii_d	Y
Ypt4000	Y
Ypt4879	Y
Ypt4880	T