ChickenSD
Detail information of ggaS0029001498383
1.General Information
SNP ID: |
ggaS0029001498383 |
Organism: |
Gallus gallus |
Individual: |
127S_L2_I045 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
C |
3.Reference Map information
Chrom |
Position |
Reference |
127S_L2_I045
|
chr19
|
352
|
T
|
C
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0029001498383 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
101S_L1_I028
|
C
|
102S_L3_I037
|
C
|
103S
|
C
|
104S_L7_I029
|
C
|
105S_L3_I039
|
Y
|
106S_L6_I030
|
C
|
107S_L2_I031
|
T
|
109S_L5_I033
|
T
|
10S_L1_I052
|
C
|
110S_L4_I034
|
C
|
111S_L3_I047
|
T
|
113S_L1_I036
|
T
|
116S_L6_I038
|
C
|
117S_L2_I039
|
C
|
118S_L4_I040
|
C
|
119S_L3_I041
|
C
|
11S
|
C
|
120S_L1_I041
|
Y
|
121S_L3_I042
|
T
|
122S_L4_I043
|
C
|
123S_L4_I044
|
C
|
124S_L2_I048
|
C
|
125S_L3_I050
|
C
|
126S_L3_I051
|
C
|
128S_L1_I042
|
C
|
129S_L3_I043
|
C
|
12S_L4_I011
|
Y
|
130S_L4_I044
|
Y
|
131S_L2_I045
|
C
|
132S_L2_I046
|
C
|
133S_L8_I046
|
T
|
134S_L2_I047
|
C
|
135S_L3_I048
|
Y
|
13S_L7_I012
|
C
|
15S_L6_I022
|
Y
|
16S_L5_I023
|
C
|
18833
|
C
|
19S_L4_I026
|
C
|
1S
|
Y
|
20736
|
C
|
21S_L6_I028
|
T
|
23S_L2_I030
|
C
|
24S_L4_I031
|
C
|
25S_L3_I032
|
C
|
26S
|
C
|
27S_L4_I034
|
Y
|
28S_L4_I035
|
C
|
29S_L3_I036
|
C
|
2S
|
Y
|
30S_L2_I037
|
C
|
31S_L3_I038
|
C
|
32S_L1_I039
|
C
|
35S_L5_I041
|
C
|
36S_L5_I042
|
C
|
37S_L2_I043
|
C
|
38S_L6_I044
|
Y
|
39S_L6_I053
|
C
|
3S_L4_I003
|
Y
|
40S_L2_I054
|
C
|
41S_L5_I045
|
C
|
42S_L3_I055
|
C
|
43S
|
C
|
44S_L4_I001
|
C
|
45S_L2_I002
|
Y
|
46S_L4_I003
|
Y
|
48S_L1_I004
|
Y
|
4S_L4_I004
|
C
|
50S_L1_I047
|
C
|
53S_L2_I006
|
C
|
55S_L1_I008
|
C
|
56S_L1_I010
|
C
|
57S_L3_I046
|
C
|
58S_L4_I051
|
C
|
5S
|
T
|
60S_L5_I053
|
C
|
63S_L5_I056
|
C
|
64S_L4_I001
|
Y
|
66S_L2_I003
|
C
|
67S_L1_I011
|
C
|
68S_L3_I012
|
C
|
6S
|
T
|
71S_L3_I023
|
C
|
72S_L1_I024
|
C
|
73S_L1_I025
|
Y
|
74S_L4_I026
|
C
|
75S_L3_I027
|
C
|
77S_L4_I029
|
C
|
7S_L4_I007
|
Y
|
80S_L3_I004
|
C
|
81S_L1_I005
|
C
|
82S
|
C
|
83S_L3_I033
|
C
|
85S_L5_I007
|
T
|
86S_L5_I008
|
C
|
88S_L4_I011
|
C
|
89S_L6_I012
|
T
|
90S_L4_I021
|
T
|
92S_L5_I023
|
T
|
93S_L7_I024
|
T
|
95S_L8_I025
|
Y
|
96S_L4_I026
|
T
|
97S_L8_I027
|
C
|
99S_L2_I035
|
Y
|
9S
|
Y
|
A10
|
C
|
A12
|
C
|
A3
|
C
|
BKL2
|
C
|
BLB2_L2_I008
|
C
|
BLO15
|
C
|
BOJA2
|
C
|
GVF
|
C
|
India1
|
C
|
India11
|
C
|
India13
|
C
|
India17
|
C
|
India19
|
C
|
India21
|
C
|
India23
|
C
|
India25
|
C
|
India27
|
C
|
India29
|
C
|
India31
|
C
|
India33
|
C
|
India35
|
C
|
India37
|
C
|
India39
|
C
|
India41
|
C
|
India43
|
C
|
India45
|
C
|
India47
|
C
|
India5
|
C
|
India51
|
C
|
India55
|
C
|
India57
|
C
|
India59
|
Y
|
India61
|
C
|
India9
|
C
|
L2
|
C
|
N1
|
C
|
N11
|
Y
|
N13
|
C
|
N18
|
C
|
N3
|
C
|
N5
|
C
|
N7
|
C
|
N8
|
C
|
S-f1_L4_I106
|
C
|
S-f2_I107
|
C
|
S-f3_I108
|
C
|
S-m1_I101
|
C
|
S-m3_I103
|
C
|
S-m4_L2_I104
|
C
|
S-m5_I105
|
C
|
S6
|
C
|
SAMN02486156
|
C
|
SAMN02486158
|
C
|
SAMN02486159
|
C
|
SAMN02486160
|
C
|
SAMN02486161
|
C
|
SAMN02486163
|
Y
|
SAMN02486164
|
Y
|
SAMN02486165
|
C
|
SAMN02486166
|
T
|
SAMN02486167
|
C
|
Silkia
|
C
|
T2
|
C
|
T5
|
C
|
TD1
|
C
|
TD12
|
C
|
TD15
|
C
|
TD22
|
C
|
TD27
|
C
|
TD30
|
C
|
TD6
|
C
|
TD9
|
C
|
Tibet
|
C
|
Xcelris_104
|
C
|
Xcelris_105
|
C
|
Xcelris_10A
|
Y
|
Xcelris_10B
|
T
|
Xcelris_112
|
Y
|
Xcelris_113
|
C
|
Xcelris_114
|
C
|
Xcelris_11B
|
C
|
Xcelris_12
|
C
|
Xcelris_120
|
C
|
Xcelris_127
|
Y
|
Xcelris_128
|
Y
|
Xcelris_129
|
C
|
Xcelris_12A
|
C
|
Xcelris_13
|
T
|
Xcelris_13B
|
C
|
Xcelris_14
|
Y
|
Xcelris_141
|
C
|
Xcelris_142
|
T
|
Xcelris_144
|
T
|
Xcelris_14A
|
C
|
Xcelris_176
|
C
|
Xcelris_1B
|
C
|
Xcelris_219
|
Y
|
Xcelris_221
|
C
|
Xcelris_224
|
C
|
Xcelris_226
|
C
|
Xcelris_227
|
Y
|
Xcelris_278
|
Y
|
Xcelris_282
|
T
|
Xcelris_2B
|
C
|
Xcelris_3
|
T
|
Xcelris_331
|
C
|
Xcelris_332
|
C
|
Xcelris_333
|
C
|
Xcelris_335
|
Y
|
Xcelris_336
|
Y
|
Xcelris_339
|
C
|
Xcelris_340
|
T
|
Xcelris_341
|
T
|
Xcelris_36
|
C
|
Xcelris_377
|
Y
|
Xcelris_378
|
Y
|
Xcelris_379
|
T
|
Xcelris_380
|
C
|
Xcelris_381
|
T
|
Xcelris_382
|
T
|
Xcelris_383
|
Y
|
Xcelris_384
|
C
|
Xcelris_385
|
Y
|
Xcelris_392
|
C
|
Xcelris_394
|
Y
|
Xcelris_4A
|
C
|
Xcelris_4B
|
C
|
Xcelris_67
|
Y
|
Xcelris_6A
|
C
|
Xcelris_6B
|
C
|
Xcelris_77
|
Y
|
Xcelris_84
|
C
|
Xcelris_8A
|
C
|
Xcelris_8B
|
C
|
Xcelris_90
|
Y
|
Xcelris_97
|
T
|
Xcelris_98
|
Y
|
Xcelris_MT-134
|
Y
|
Xcelris_MT-18
|
Y
|
Xcelris_MT-48
|
C
|
Xcelris_MT-6
|
C
|
Xcelris_MT-85
|
Y
|
Xcelris_MT-9
|
C
|
Xcelris_MT-99
|
C
|
Y1-f1_L5_I119
|
C
|
Y1-f2_L6_I121
|
C
|
Y1-f3_L7_I101
|
C
|
Y1-m1_L6_I120
|
C
|
Y1-m2_L4_I122
|
C
|
Y1-m3_L7_I123
|
C
|
Y1-m4_I124
|
C
|
YPt565
|
C
|
YPt601
|
C
|
YPt609
|
C
|
YPt610
|
C
|
YPt637
|
C
|
YPt648
|
C
|
You1
|
C
|
You3_L7_I1000005
|
C
|
Ypt566
|
C
|
Ypt567
|
C
|
Ypt568
|
C
|
Ypt569
|
C
|
Ypt570
|
C
|
Ypt573
|
C
|
Ypt575
|
C
|
Ypt576
|
C
|
Ypt577
|
C
|
Ypt578
|
C
|
Ypt579
|
C
|
Ypt582
|
C
|
Ypt585
|
C
|
Ypt586
|
C
|
Ypt588
|
C
|
Ypt589
|
C
|
Ypt590
|
C
|
Ypt593
|
C
|
Ypt595
|
C
|
Ypt597
|
C
|
Ypt599
|
C
|
Ypt603
|
C
|
Ypt606
|
C
|
Ypt607
|
C
|
Ypt608
|
C
|
Ypt622
|
C
|
Ypt623
|
C
|
Ypt626
|
C
|
Ypt638
|
C
|
Ypt640
|
C
|
Ypt643
|
C
|
Ypt645
|
C
|
Ypt646
|
C
|
Ypt647
|
C
|
Yt516
|
C
|
Yt517
|
C
|
Yt518
|
C
|
Yt519
|
C
|
Yt520
|
C
|
Yt521
|
C
|
Yt523
|
C
|
Yt524
|
C
|
Yt525
|
C
|
Yt526
|
C
|
Yt527
|
Y
|
Yt528
|
C
|
Yt529
|
C
|
Yt530
|
C
|
Yt531
|
C
|
Yt536
|
C
|
Yt538
|
C
|
Yt539
|
C
|
Yt540
|
C
|
ZJ1
|
T
|
ZJ2
|
Y
|
ZJ3
|
C
|
ZJ4
|
C
|
india3
|
C
|
production
|
C
|
ypt171_L2_I021
|
C
|
ypt173_L2_I022
|
C
|
ypt2041_L6_I002
|
C
|
ypt2043_L1_I037
|
C
|
ypt2051_L3_I003
|
C
|
ypt2053_L6_I004
|
C
|
ypt2063_L6_I005
|
C
|
ypt2069_L6_I006
|
C
|
ypt2071_L1_I038
|
C
|
ypt2082
|
T
|
ypt2086
|
T
|
ypt2087
|
T
|
ypt2092
|
C
|
ypt2093
|
Y
|
ypt2094
|
T
|
ypt2095
|
T
|
ypt2098
|
T
|
ypt2100
|
T
|
ypt2101
|
T
|
ypt2102
|
T
|
ypt2105
|
T
|
ypt2112
|
Y
|
ypt2115
|
C
|
ypt2117
|
C
|
ypt2118
|
Y
|
ypt2119
|
C
|
ypt2120
|
C
|
ypt2121
|
C
|
ypt2124_L4_I052
|
C
|
ypt2127_L1_I036
|
C
|
ypt2128_L6_I054
|
C
|
ypt2144_L6_I055
|
C
|
ypt2146_L6_I001
|
C
|
ypt2163
|
T
|
ypt2164
|
Y
|
ypt2165
|
T
|
ypt2166
|
C
|
ypt2167
|
Y
|
ypt2168
|
Y
|
ypt2169
|
C
|
ypt2171
|
C
|
ypt2172
|
C
|
ypt2174
|
C
|
ypt2175
|
Y
|
ypt2176
|
T
|
ypt2177
|
C
|
ypt217_L2_I024
|
T
|
ypt2184
|
C
|
ypt2185
|
C
|
ypt2186
|
C
|
ypt2187
|
C
|
ypt2190
|
T
|
ypt219_L3_I025
|
C
|
ypt2200
|
C
|
ypt2201
|
Y
|
ypt2209
|
C
|
ypt2216
|
Y
|
ypt2217
|
C
|
ypt2219
|
C
|
ypt2220
|
C
|
ypt2221
|
C
|
ypt2222
|
C
|
ypt222_L3_I027
|
C
|
ypt2437
|
Y
|
ypt2438
|
C
|
ypt2439
|
T
|
ypt2441
|
T
|
ypt2442
|
C
|
ypt2443
|
C
|
ypt2444
|
T
|
ypt2446
|
T
|
ypt2448
|
C
|
ypt2449
|
C
|
ypt2454
|
C
|
ypt2459
|
C
|
ypt2468
|
C
|
ypt2496
|
Y
|
ypt2497
|
T
|
ypt2498
|
C
|
ypt2499
|
C
|
ypt2500
|
C
|
ypt2503
|
C
|
ypt2504
|
C
|
ypt2512
|
C
|
ypt2516
|
C
|
ypt2521
|
Y
|
ypt2523
|
Y
|
ypt2534
|
C
|
ypt2541
|
C
|
ypt2543
|
T
|
ypt2544
|
C
|
ypt2545
|
Y
|
ypt2546
|
C
|
ypt2552
|
Y
|
ypt2562
|
C
|
ypt2569
|
C
|
ypt2573
|
C
|
ypt2574
|
Y
|
ypt2575
|
C
|
ypt258_L3_I028
|
T
|
ypt259_L2_I029
|
C
|
ypt2601
|
C
|
ypt2606
|
C
|
ypt2608
|
C
|
ypt2615
|
Y
|
ypt2622
|
C
|
ypt2623
|
C
|
ypt2624
|
Y
|
ypt2625
|
C
|
ypt2627
|
C
|
ypt2628
|
C
|
ypt262_L3_I030
|
C
|
ypt2630
|
C
|
ypt2636
|
C
|
ypt2638
|
Y
|
ypt263_L3_I031
|
C
|
ypt2640
|
Y
|
ypt2641
|
C
|
ypt2643
|
C
|
ypt2644
|
C
|
ypt2646
|
C
|
ypt264_L3_I032
|
C
|
ypt2650
|
Y
|
ypt2653
|
Y
|
ypt2657
|
Y
|
ypt2661
|
C
|
ypt2664
|
C
|
ypt2670
|
C
|
ypt2672
|
C
|
ypt2673
|
C
|
ypt2678
|
C
|
ypt2706
|
C
|
ypt2724
|
T
|
ypt2729
|
C
|
ypt2740
|
C
|
ypt2745
|
Y
|
ypt2760
|
C
|
ypt2761
|
C
|
ypt2765
|
C
|
ypt2775
|
T
|
ypt2781
|
C
|
ypt2782
|
C
|
ypt2783
|
Y
|
ypt2784
|
C
|
ypt2785
|
C
|
ypt2787
|
C
|
ypt2790
|
Y
|
ypt2791
|
C
|
ypt2792
|
C
|
ypt2799
|
C
|
ypt2800
|
C
|
ypt2810
|
T
|
ypt2812
|
C
|
ypt2814
|
C
|
ypt2815
|
T
|
ypt2816
|
T
|
ypt2819
|
T
|
ypt2821
|
T
|
ypt2822
|
Y
|
ypt2823
|
T
|
ypt2824
|
C
|
ypt2826
|
Y
|
ypt2827
|
Y
|
ypt2831
|
C
|
ypt2832
|
C
|
ypt2843
|
C
|
ypt2859
|
C
|
ypt2861
|
C
|
ypt2870
|
C
|
ypt2888
|
C
|
ypt2891_L3_I041
|
C
|
ypt2892
|
C
|
ypt2893_L3_I025
|
C
|
ypt2894
|
C
|
ypt2902
|
C
|
ypt2909
|
C
|
ypt2910
|
C
|
ypt2911
|
C
|
ypt2912
|
C
|
ypt2918
|
C
|
ypt2929
|
C
|
ypt2930
|
C
|
ypt3001
|
C
|
ypt3002
|
C
|
ypt3003
|
C
|
ypt3004
|
C
|
ypt3005
|
C
|
ypt3006
|
C
|
ypt3007
|
C
|
ypt3008
|
C
|
ypt3009
|
C
|
ypt3010
|
C
|
ypt3011
|
C
|
ypt3012
|
C
|
ypt3016
|
Y
|
ypt3017
|
C
|
ypt3038
|
C
|
ypt3040
|
C
|
ypt3041
|
C
|
ypt3042
|
Y
|
ypt3043
|
C
|
ypt3044
|
C
|
ypt3045
|
C
|
ypt3046
|
C
|
ypt3047
|
C
|
ypt3050
|
C
|
ypt3051
|
C
|
ypt3052
|
C
|
ypt3061
|
C
|
ypt3072
|
C
|
ypt3134
|
C
|
ypt3135
|
C
|
ypt3136
|
C
|
ypt3137
|
C
|
ypt3138
|
C
|
ypt3140
|
C
|
ypt3141
|
C
|
ypt3142
|
C
|
ypt3143
|
C
|
ypt3145
|
Y
|
ypt3146
|
Y
|
ypt3149_L2_I034
|
C
|
ypt3150_L8_I023
|
T
|
ypt3159_L6_I035
|
C
|
ypt3160_L8_I024
|
C
|
ypt3162_L6_I036
|
C
|
ypt3180
|
C
|
ypt3181_L7_I038
|
C
|
ypt3182_L1_I039
|
C
|
ypt3189_L1_I040
|
C
|
ypt3190_L8_I026
|
C
|
ypt3191_L2_I041
|
C
|
ypt3193_L1_I027
|
C
|
ypt3195_L1_I042
|
C
|
ypt3196_L2_I043
|
C
|
ypt3197_L1_I044
|
C
|
ypt3205_L2_I047
|
C
|
ypt3206_L1_I048
|
C
|
ypt3207_L6_I050
|
Y
|
ypt3210_L6_I051
|
T
|
ypt3211_L6_I052
|
Y
|
ypt3212_L4_I028
|
C
|
ypt3213_L8_I029
|
C
|
ypt3219_L1_I030
|
C
|
ypt3220_L1_I031
|
C
|
ypt3221_L1_I032
|
C
|
ypt3222_L1_I033
|
Y
|
ypt3224_L8_I043
|
Y
|
ypt3225_L2_I053
|
C
|
ypt3226_L3_I044
|
C
|
ypt3228-7_L1_I034
|
T
|
ypt3238_L3_I046
|
C
|
ypt3239_L1_I035
|
Y
|
ypt3240_L6_I054
|
C
|
ypt3241_L6_I055
|
T
|
ypt3245
|
T
|
ypt3246_L6_I050
|
C
|
ypt3259_L6_I002
|
C
|
ypt3261_L7_I004
|
C
|
ypt3262_L7_I005
|
Y
|
ypt3269_L7_I006
|
C
|
ypt3271_L7_I008
|
C
|
ypt3272_L7_I010
|
C
|
ypt3274A_L7_I011
|
Y
|
ypt3277_L6_I027
|
Y
|
ypt4001
|
T
|
ypt50_L2_I030
|
C
|
ypt51_L2_I031
|
T
|
ypt53_L2_I032
|
C
|
ypt55_L1_I033
|
C
|
ypt890
|
C
|
ypt891
|
Y
|
ypt896_L2_I047
|
Y
|
ypt897_L3_I048
|
C
|
ypt898
|
T
|
ypt899_L6_I051
|
T
|
ypt900_L2_I050
|
C
|
ypt901_L1_I052
|
Y
|
ypt902_L1_I053
|
Y
|
ypt903_L2_I054
|
T
|
ypt904_L4_I055
|
C
|
ypt905_L6_I056
|
T
|
ypt906_L3_I001
|
T
|
ypt907_L6_I002
|
Y
|
ypt908_L1_I003
|
C
|
ypt909_L5_I004
|
Y
|
ypt910_L3_I005
|
C
|
ypt911_L6_I006
|
Y
|
ypt913
|
C
|
ypt915
|
C
|
ypt919_L4_I008
|
Y
|
ypt920_L5_I010
|
C
|
ypt921_L8_I011
|
C
|
ypt923_L2_I051
|
Y
|
ypt925_L2_I022
|
C
|
ypt926_L2_I023
|
C
|
ypt928
|
C
|
ypt929
|
Y
|
ypt930
|
T
|
ypt931
|
Y
|
ypt932
|
Y
|
ypt933
|
Y
|
ypt936
|
C
|
ypt937
|
C
|
ypt938x
|
Y
|
ypt939_L5_I025
|
C
|
ypt940_L4_I026
|
C
|
ypt941_L5_I027
|
C
|
ypt942_L7_I028
|
C
|
ypt943
|
C
|
ypt944_L3_I030
|
C
|
ypt945_L4_I031
|
C
|
ypt946_L4_I032
|
C
|
ypt947_L5_I033
|
C
|
ypt949_L3_I035
|
C
|
ypt950_L5_I036
|
C
|
ypt952
|
C
|
ypt953
|
C
|
ypt954
|
C
|
ypt956x
|
C
|
ypt957
|
C
|
ypt958
|
C
|
ypt959
|
C
|
ypt960
|
C
|
ypt961
|
C
|
ypt962
|
C
|
ypt963
|
C
|
ypt966
|
C
|
ypt972x
|
C
|
ypt973_L4_I037
|
C
|
ypt974
|
C
|
ypt975_L8_I039
|
C
|
ypt976_L7_I040
|
C
|
ypt979_L6_I042
|
C
|
ypt982_L4_I045
|
C
|
ypt984
|
C
|
147209
|
C
|
147830
|
C
|
GLF_denovo
|
C
|
Ypt4879
|
C
|