ChickenSD
Detail information of ggaS0043001348129
1.General Information
SNP ID: |
ggaS0043001348129 |
Organism: |
Gallus gallus |
Individual: |
17S_L3_I024 |
2.Allele information
Platform: |
SOLEXA |
Method: |
sequence |
SNP Class: |
SNP |
Genotype: |
T |
3.Reference Map information
Chrom |
Position |
Reference |
17S_L3_I024
|
chr14
|
1432
|
A
|
T
|
4.Gene information
Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
ggaS0043001348129 |
-
|
|
|
intergenic_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
Individual |
Genotype |
100S
|
A
|
101S_L1_I028
|
A
|
102S_L3_I037
|
A
|
103S
|
A
|
104S_L7_I029
|
A
|
105S_L3_I039
|
A
|
106S_L6_I030
|
A
|
107S_L2_I031
|
A
|
108S_L6_I032
|
A
|
109S_L5_I033
|
A
|
110S_L4_I034
|
A
|
111S_L3_I047
|
A
|
112S_L3_I035
|
A
|
113S_L1_I036
|
A
|
116S_L6_I038
|
A
|
117S_L2_I039
|
A
|
118S_L4_I040
|
A
|
119S_L3_I041
|
A
|
11S
|
A
|
121S_L3_I042
|
A
|
123S_L4_I044
|
A
|
124S_L2_I048
|
A
|
125S_L3_I050
|
A
|
126S_L3_I051
|
A
|
128S_L1_I042
|
A
|
129S_L3_I043
|
A
|
12S_L4_I011
|
A
|
130S_L4_I044
|
A
|
131S_L2_I045
|
A
|
132S_L2_I046
|
W
|
133S_L8_I046
|
A
|
14S_L2_I021
|
A
|
16S_L5_I023
|
A
|
18833
|
A
|
18S_L7_I025
|
A
|
19297
|
A
|
19S_L4_I026
|
A
|
21S_L6_I028
|
A
|
22S_L6_I029
|
W
|
23S_L2_I030
|
W
|
27S_L4_I034
|
A
|
28S_L4_I035
|
A
|
29S_L3_I036
|
A
|
2S
|
A
|
30S_L2_I037
|
A
|
31S_L3_I038
|
A
|
33S
|
A
|
35S_L5_I041
|
A
|
36S_L5_I042
|
A
|
37S_L2_I043
|
A
|
39S_L6_I053
|
A
|
3S_L4_I003
|
A
|
40S_L2_I054
|
A
|
41S_L5_I045
|
A
|
43S
|
A
|
44S_L4_I001
|
A
|
45S_L2_I002
|
A
|
46S_L4_I003
|
A
|
48S_L1_I004
|
A
|
49S_L1_I005
|
A
|
4S_L4_I004
|
A
|
50S_L1_I047
|
A
|
52S_L2_I050
|
A
|
53S_L2_I006
|
A
|
54S_L2_I007
|
A
|
55S_L1_I008
|
A
|
57S_L3_I046
|
A
|
58S_L4_I051
|
A
|
60S_L5_I053
|
W
|
61S_L8_I054
|
A
|
62S_L8_I055
|
A
|
63S_L5_I056
|
A
|
64S_L4_I001
|
A
|
65S_L5_I002
|
A
|
66S_L2_I003
|
A
|
68S_L3_I012
|
A
|
69S
|
A
|
6S
|
A
|
70S
|
A
|
71S_L3_I023
|
W
|
72S_L1_I024
|
T
|
75S_L3_I027
|
A
|
76S_L1_I028
|
W
|
78S_L4_I030
|
A
|
79S_L2_I031
|
A
|
7S_L4_I007
|
A
|
81S_L1_I005
|
A
|
82S
|
A
|
84S_L5_I006
|
A
|
85S_L5_I007
|
A
|
87S_L5_I010
|
A
|
88S_L4_I011
|
A
|
93S_L7_I024
|
A
|
95S_L8_I025
|
A
|
96S_L4_I026
|
A
|
97S_L8_I027
|
A
|
98S_L3_I034
|
A
|
99S_L2_I035
|
A
|
9S
|
A
|
A1
|
A
|
A10
|
A
|
A12
|
A
|
A14
|
A
|
A8
|
A
|
India1
|
A
|
India13
|
A
|
India15
|
A
|
India17
|
A
|
India21
|
A
|
India23
|
A
|
India27
|
A
|
India29
|
A
|
India31
|
A
|
India33
|
A
|
India37
|
A
|
India39
|
A
|
India41
|
A
|
India43
|
A
|
India45
|
A
|
India5
|
A
|
India55
|
A
|
India57
|
A
|
India61
|
A
|
India9
|
A
|
L2
|
A
|
N1
|
A
|
N11
|
A
|
N13
|
A
|
N3
|
A
|
N5
|
A
|
N8
|
A
|
S-f1_L4_I106
|
A
|
S-f2_I107
|
A
|
S-f3_I108
|
A
|
S-f4_L4_I109
|
A
|
S-m1_I101
|
A
|
S-m2_I102
|
A
|
S-m3_I103
|
A
|
S-m5_I105
|
A
|
S6
|
A
|
SAMN02486156
|
A
|
SAMN02486157
|
W
|
SAMN02486158
|
A
|
SAMN02486159
|
A
|
SAMN02486160
|
A
|
SAMN02486161
|
A
|
SAMN02486163
|
A
|
SAMN02486164
|
A
|
SAMN02486165
|
A
|
SAMN02486166
|
A
|
SAMN02486167
|
A
|
Silkia
|
A
|
T2
|
A
|
T3
|
A
|
T5
|
A
|
TD1
|
A
|
TD12
|
A
|
TD27
|
W
|
TD6
|
A
|
TD9
|
A
|
Tibet
|
A
|
Xcelris_112
|
A
|
Xcelris_113
|
A
|
Xcelris_114
|
A
|
Xcelris_14
|
A
|
Xcelris_143
|
A
|
Xcelris_176
|
A
|
Xcelris_219
|
A
|
Xcelris_224
|
A
|
Xcelris_275
|
A
|
Xcelris_280
|
A
|
Xcelris_2A
|
A
|
Xcelris_2B
|
A
|
Xcelris_331
|
A
|
Xcelris_333
|
W
|
Xcelris_339
|
A
|
Xcelris_340
|
A
|
Xcelris_341
|
A
|
Xcelris_378
|
A
|
Xcelris_379
|
A
|
Xcelris_382
|
A
|
Xcelris_383
|
A
|
Xcelris_384
|
A
|
Xcelris_385
|
A
|
Xcelris_5A
|
A
|
Xcelris_67
|
A
|
Xcelris_7
|
A
|
Xcelris_84
|
A
|
Xcelris_90
|
A
|
Xcelris_98
|
A
|
Xcelris_MT-134
|
A
|
Xcelris_MT-18
|
A
|
Y1-f2_L6_I121
|
A
|
Y1-m1_L6_I120
|
A
|
Y1-m2_L4_I122
|
A
|
Y1-m3_L7_I123
|
A
|
Y1-m4_I124
|
A
|
Y1-m5_L7_I102
|
A
|
YPt565
|
A
|
YPt601
|
A
|
YPt604
|
A
|
YPt609
|
A
|
YPt610
|
A
|
YPt637
|
A
|
YPt641
|
A
|
YPt648
|
A
|
You1
|
A
|
Ypt566
|
A
|
Ypt567
|
A
|
Ypt568
|
A
|
Ypt569
|
A
|
Ypt570
|
A
|
Ypt572
|
A
|
Ypt573
|
A
|
Ypt574
|
A
|
Ypt575
|
A
|
Ypt576
|
A
|
Ypt577
|
A
|
Ypt578
|
A
|
Ypt579
|
A
|
Ypt580
|
A
|
Ypt582
|
A
|
Ypt583
|
A
|
Ypt584
|
A
|
Ypt585
|
A
|
Ypt586
|
A
|
Ypt587
|
A
|
Ypt588
|
T
|
Ypt589
|
A
|
Ypt590
|
A
|
Ypt591
|
A
|
Ypt593
|
A
|
Ypt594
|
A
|
Ypt595
|
A
|
Ypt597
|
A
|
Ypt598
|
A
|
Ypt599
|
A
|
Ypt600
|
A
|
Ypt603
|
A
|
Ypt606
|
A
|
Ypt607
|
A
|
Ypt608
|
A
|
Ypt622
|
A
|
Ypt623
|
A
|
Ypt624
|
A
|
Ypt626
|
A
|
Ypt638
|
A
|
Ypt640
|
A
|
Ypt645
|
A
|
Yt516
|
A
|
Yt517
|
A
|
Yt518
|
A
|
Yt519
|
W
|
Yt520
|
A
|
Yt521
|
A
|
Yt522
|
A
|
Yt524
|
A
|
Yt525
|
A
|
Yt526
|
A
|
Yt527
|
A
|
Yt528
|
A
|
Yt529
|
A
|
Yt530
|
A
|
Yt531
|
A
|
Yt536
|
A
|
Yt538
|
A
|
Yt539
|
A
|
Yt540
|
A
|
ZJ1
|
A
|
ZJ3
|
A
|
production
|
A
|
yp914ypt
|
A
|
ypt169_L3_I011
|
A
|
ypt171_L2_I021
|
A
|
ypt173_L2_I022
|
A
|
ypt175_L2_I023
|
A
|
ypt2041_L6_I002
|
A
|
ypt2043_L1_I037
|
A
|
ypt2051_L3_I003
|
A
|
ypt2069_L6_I006
|
A
|
ypt2086
|
A
|
ypt2087
|
A
|
ypt2091
|
A
|
ypt2092
|
A
|
ypt2093
|
A
|
ypt2094
|
A
|
ypt2095
|
A
|
ypt2098
|
A
|
ypt2100
|
A
|
ypt2102
|
A
|
ypt2107
|
A
|
ypt2108
|
A
|
ypt2110
|
A
|
ypt2112
|
A
|
ypt2114
|
A
|
ypt2115
|
A
|
ypt2117
|
A
|
ypt2118
|
A
|
ypt2121
|
A
|
ypt2122
|
A
|
ypt2124_L4_I052
|
A
|
ypt2126_L3_I053
|
A
|
ypt2128_L6_I054
|
A
|
ypt2144_L6_I055
|
A
|
ypt2145_L6_I056
|
A
|
ypt2146_L6_I001
|
A
|
ypt2163
|
A
|
ypt2164
|
A
|
ypt2165
|
A
|
ypt2166
|
A
|
ypt2168
|
A
|
ypt2170
|
A
|
ypt2171
|
A
|
ypt2174
|
A
|
ypt2175
|
A
|
ypt2177
|
A
|
ypt2178
|
A
|
ypt2184
|
A
|
ypt2185
|
W
|
ypt2186
|
A
|
ypt2187
|
A
|
ypt2189
|
A
|
ypt219_L3_I025
|
A
|
ypt2200
|
A
|
ypt2205
|
A
|
ypt2214
|
A
|
ypt2216
|
A
|
ypt221_L3_I042
|
A
|
ypt2220
|
A
|
ypt2221
|
A
|
ypt2222
|
A
|
ypt222_L3_I027
|
A
|
ypt2437
|
A
|
ypt2438
|
A
|
ypt2439
|
A
|
ypt2440
|
A
|
ypt2441
|
A
|
ypt2443
|
A
|
ypt2444
|
A
|
ypt2445
|
A
|
ypt2446
|
A
|
ypt2448
|
A
|
ypt2449
|
A
|
ypt2454
|
A
|
ypt2459
|
A
|
ypt2468
|
A
|
ypt2497
|
A
|
ypt2499
|
A
|
ypt2500
|
A
|
ypt2503
|
A
|
ypt2504
|
A
|
ypt2512
|
A
|
ypt2516
|
A
|
ypt2521
|
A
|
ypt2523
|
A
|
ypt2534
|
A
|
ypt2541
|
W
|
ypt2543
|
A
|
ypt2547
|
A
|
ypt2562
|
A
|
ypt2569
|
A
|
ypt2570
|
A
|
ypt2571
|
A
|
ypt2573
|
A
|
ypt258_L3_I028
|
A
|
ypt2598
|
W
|
ypt259_L2_I029
|
W
|
ypt2615
|
A
|
ypt2622
|
A
|
ypt2623
|
A
|
ypt2624
|
A
|
ypt2625
|
A
|
ypt2627
|
A
|
ypt2629
|
A
|
ypt262_L3_I030
|
A
|
ypt2630
|
A
|
ypt2636
|
A
|
ypt263_L3_I031
|
A
|
ypt2640
|
A
|
ypt2641
|
A
|
ypt2643
|
A
|
ypt2646
|
A
|
ypt264_L3_I032
|
A
|
ypt2650
|
A
|
ypt2653
|
A
|
ypt2657
|
A
|
ypt2658
|
A
|
ypt2661
|
A
|
ypt2664
|
A
|
ypt2669
|
A
|
ypt2670
|
A
|
ypt2671
|
A
|
ypt2672
|
A
|
ypt2678
|
A
|
ypt2706
|
A
|
ypt2729
|
W
|
ypt2733
|
A
|
ypt2739
|
A
|
ypt2740
|
A
|
ypt2745
|
A
|
ypt2746
|
A
|
ypt2760
|
A
|
ypt2765
|
A
|
ypt2766
|
A
|
ypt2775
|
A
|
ypt2780
|
A
|
ypt2781
|
W
|
ypt2782
|
T
|
ypt2785
|
A
|
ypt2786
|
W
|
ypt2788
|
A
|
ypt2789
|
A
|
ypt2790
|
A
|
ypt2792
|
A
|
ypt2799
|
A
|
ypt2808
|
A
|
ypt2810
|
A
|
ypt2813
|
A
|
ypt2814
|
A
|
ypt2821
|
A
|
ypt2822
|
A
|
ypt2823
|
A
|
ypt2824
|
A
|
ypt2825
|
A
|
ypt2826
|
A
|
ypt2827
|
A
|
ypt2828
|
A
|
ypt2831
|
A
|
ypt2832
|
A
|
ypt2842
|
A
|
ypt2849
|
A
|
ypt2892
|
A
|
ypt2894
|
A
|
ypt2895_L3_I026
|
A
|
ypt2902
|
A
|
ypt2910
|
A
|
ypt2911
|
A
|
ypt2918
|
A
|
ypt2929
|
A
|
ypt2930
|
A
|
ypt3001
|
A
|
ypt3003
|
A
|
ypt3004
|
A
|
ypt3005
|
A
|
ypt3006
|
A
|
ypt3007
|
A
|
ypt3009
|
A
|
ypt3011
|
A
|
ypt3012
|
A
|
ypt3017
|
A
|
ypt3038
|
A
|
ypt3040
|
A
|
ypt3041
|
A
|
ypt3042
|
A
|
ypt3043
|
A
|
ypt3045
|
A
|
ypt3046
|
A
|
ypt3050
|
A
|
ypt3051
|
A
|
ypt3052
|
A
|
ypt3061
|
A
|
ypt3069
|
A
|
ypt3072
|
A
|
ypt3133
|
A
|
ypt3134
|
A
|
ypt3136
|
A
|
ypt3137
|
A
|
ypt3138
|
A
|
ypt3139
|
W
|
ypt3140
|
A
|
ypt3141
|
A
|
ypt3142
|
A
|
ypt3143
|
A
|
ypt3145
|
A
|
ypt3146
|
A
|
ypt3149_L2_I034
|
A
|
ypt3150_L8_I023
|
A
|
ypt3159_L6_I035
|
A
|
ypt3160_L8_I024
|
A
|
ypt3162_L6_I036
|
A
|
ypt3179_L8_I025
|
A
|
ypt3180
|
A
|
ypt3181_L7_I038
|
A
|
ypt3182_L1_I039
|
A
|
ypt3191_L2_I041
|
W
|
ypt3195_L1_I042
|
A
|
ypt3196_L2_I043
|
A
|
ypt3197_L1_I044
|
A
|
ypt3211_L6_I052
|
A
|
ypt3212_L4_I028
|
A
|
ypt3213_L8_I029
|
A
|
ypt3239_L1_I035
|
A
|
ypt3243_L8_I047
|
A
|
ypt3259_L6_I002
|
A
|
ypt3262_L7_I005
|
A
|
ypt3271_L7_I008
|
A
|
ypt3275_L1_I012
|
A
|
ypt3289_L8_I021
|
A
|
ypt47_L2_I029
|
A
|
ypt50_L2_I030
|
A
|
ypt53_L2_I032
|
A
|
ypt890
|
W
|
ypt897_L3_I048
|
A
|
ypt898
|
A
|
ypt899_L6_I051
|
A
|
ypt902_L1_I053
|
A
|
ypt903_L2_I054
|
A
|
ypt906_L3_I001
|
A
|
ypt907_L6_I002
|
A
|
ypt908_L1_I003
|
A
|
ypt909_L5_I004
|
A
|
ypt917
|
A
|
ypt919_L4_I008
|
A
|
ypt922_L4_I012
|
A
|
ypt925_L2_I022
|
A
|
ypt929
|
A
|
ypt931
|
A
|
ypt932
|
A
|
ypt933
|
A
|
ypt942_L7_I028
|
A
|
ypt944_L3_I030
|
A
|
ypt945_L4_I031
|
A
|
ypt946_L4_I032
|
A
|
ypt947_L5_I033
|
A
|
ypt948_L2_I034
|
A
|
ypt949_L3_I035
|
A
|
ypt950_L5_I036
|
A
|
ypt951
|
A
|
ypt952
|
A
|
ypt953
|
A
|
ypt954
|
A
|
ypt955
|
A
|
ypt956x
|
A
|
ypt957
|
A
|
ypt959
|
A
|
ypt960
|
A
|
ypt961
|
A
|
ypt962
|
A
|
ypt963
|
A
|
ypt965
|
A
|
ypt966
|
A
|
ypt971
|
A
|
ypt972x
|
A
|
ypt973_L4_I037
|
A
|
ypt974
|
A
|
ypt975_L8_I039
|
A
|
ypt976_L7_I040
|
A
|
ypt977_L2_I041
|
A
|
ypt979_L6_I042
|
A
|
ypt980_L3_I043
|
A
|
ypt981_L2_I044
|
A
|
ypt982_L4_I045
|
A
|
ypt984
|
A
|
yptwj
|
A
|
147209
|
T
|
147830
|
A
|
GLF_denovo
|
A
|
Gallus_Sonneriatii_d
|
A
|
Ypt4879
|
A
|
Ypt4880
|
A
|