ChickenSD
Detail information of ggaS0044002683853
1.General Information
| SNP ID: |
ggaS0044002683853 |
| Organism: |
Gallus gallus |
| Individual: |
18833 |
2.Allele information
| Platform: |
SOLEXA |
| Method: |
sequence |
| SNP Class: |
SNP |
| Genotype: |
C |
3.Reference Map information
| Chrom |
Position |
Reference |
18833
|
| chr25
|
2517
|
T
|
C
|
4.Gene information
| Var ID |
Gene ID |
Transcript ID |
Gene Symbol |
Variant Effect |
Biotype |
cDNA Position |
Allele Change |
Protein ID |
Protein Position |
Residue Change |
| ggaS0044002683853 |
ENSGALG00000009011
|
|
SMG5 |
intron_variant |
|
|
=>
|
|
|
=>
|
5.Individual Genotype
| Individual |
Genotype |
|
19297
|
T
|
|
23S_L2_I030
|
T
|
|
A1
|
C
|
|
India1
|
T
|
|
India19
|
T
|
|
India25
|
T
|
|
N18
|
T
|
|
Silkia
|
C
|
|
T3
|
T
|
|
T5
|
T
|
|
TD30
|
C
|
|
TD6
|
T
|
|
TD9
|
T
|
|
Xcelris_10B
|
T
|
|
Xcelris_112
|
T
|
|
Xcelris_12
|
C
|
|
Xcelris_12A
|
T
|
|
Xcelris_14B
|
T
|
|
Xcelris_1B
|
T
|
|
Xcelris_219
|
T
|
|
Xcelris_36
|
C
|
|
Xcelris_380
|
T
|
|
Xcelris_394
|
T
|
|
Xcelris_4B
|
T
|
|
Xcelris_6B
|
T
|
|
Xcelris_77
|
C
|
|
Xcelris_90
|
T
|
|
Xcelris_MT-134
|
T
|
|
Xcelris_MT-48
|
T
|
|
Xcelris_MT-99
|
T
|
|
YPt601
|
T
|
|
YPt604
|
C
|
|
YPt610
|
T
|
|
YPt637
|
T
|
|
YPt641
|
T
|
|
YPt648
|
T
|
|
You3_L7_I1000005
|
T
|
|
Ypt568
|
T
|
|
Ypt569
|
C
|
|
Ypt576
|
T
|
|
Ypt579
|
T
|
|
Ypt583
|
T
|
|
Ypt584
|
T
|
|
Ypt585
|
T
|
|
Ypt587
|
T
|
|
Ypt588
|
T
|
|
Ypt589
|
T
|
|
Ypt590
|
T
|
|
Ypt598
|
T
|
|
Ypt600
|
T
|
|
Ypt603
|
T
|
|
Ypt606
|
T
|
|
Ypt608
|
T
|
|
Ypt624
|
C
|
|
Ypt640
|
T
|
|
Ypt642
|
T
|
|
Ypt643
|
T
|
|
Ypt645
|
T
|
|
Ypt647
|
T
|
|
Yt516
|
C
|
|
Yt518
|
T
|
|
Yt520
|
T
|
|
Yt521
|
T
|
|
Yt525
|
T
|
|
Yt527
|
T
|
|
Yt528
|
T
|
|
Yt529
|
T
|
|
Yt530
|
T
|
|
Yt531
|
T
|
|
Yt536
|
Y
|
|
Yt538
|
T
|
|
Yt539
|
T
|
|
Yt540
|
T
|
|
ZJ4
|
T
|
|
ypt2069_L6_I006
|
T
|
|
ypt2165
|
T
|
|
ypt2169
|
T
|
|
ypt2187
|
C
|
|
ypt2216
|
T
|
|
ypt2571
|
T
|
|
ypt259_L2_I029
|
T
|
|
ypt2828
|
C
|
|
ypt2892
|
T
|
|
ypt2909
|
T
|
|
ypt2912
|
T
|
|
ypt3044
|
T
|
|
ypt3160_L8_I024
|
C
|
|
ypt3179_L8_I025
|
T
|
|
ypt3180
|
T
|
|
ypt3193_L1_I027
|
C
|
|
ypt3195_L1_I042
|
T
|
|
ypt3196_L2_I043
|
T
|
|
ypt3210_L6_I051
|
T
|
|
ypt3211_L6_I052
|
T
|
|
ypt3220_L1_I031
|
C
|
|
ypt3226_L3_I044
|
T
|
|
ypt3247_L6_I051
|
T
|
|
ypt3261_L7_I004
|
T
|
|
ypt3262_L7_I005
|
T
|
|
ypt900_L2_I050
|
C
|
|
ypt904_L4_I055
|
T
|
|
ypt911_L6_I006
|
T
|
|
ypt915
|
T
|
|
ypt921_L8_I011
|
T
|
|
ypt923_L2_I051
|
C
|
|
ypt929
|
T
|
|
ypt932
|
T
|
|
ypt936
|
T
|
|
ypt940_L4_I026
|
T
|
|
ypt950_L5_I036
|
T
|
|
ypt951
|
C
|
|
ypt953
|
T
|
|
ypt954
|
T
|
|
ypt955
|
T
|
|
ypt956x
|
T
|
|
ypt958
|
T
|
|
ypt961
|
T
|
|
ypt962
|
C
|
|
ypt973_L4_I037
|
T
|
|
ypt976_L7_I040
|
T
|
|
ypt980_L3_I043
|
T
|
|
ypt981_L2_I044
|
T
|
|
ypt982_L4_I045
|
T
|
|
yptwj
|
T
|
|
147209
|
T
|
|
147830
|
T
|
|
GLF_denovo
|
T
|
