MSigDB


24743996	A description of the Molecular Signatures Database (MSigDB) Web site. [PMID: 24743996] Liberzon A. Abstract Annotated lists of genes help researchers to prioritize their own lists of candidate genes and to plan follow-up studies. The Molecular Signatures Database (MSigDB) is one of the most widely used knowledge base repositories of annotated sets of genes involved in biochemical pathways, signaling cascades, expression profiles from research publications, and other biological concepts. Here we provide an overview of MSigDB and its online analytical tools. Methods Mol Biol. 2014:1150() \| 160 Citations (from Europe PMC, 2025-03-29)
21546393	Molecular signatures database (MSigDB) 3.0. [PMID: 21546393] Liberzon A, Subramanian A, Pinchback R, Thorvaldsdóttir H, Tamayo P, Mesirov JP. Abstract Well-annotated gene sets representing the universe of the biological processes are critical for meaningful and insightful interpretation of large-scale genomic data. The Molecular Signatures Database (MSigDB) is one of the most widely used repositories of such sets. We report the availability of a new version of the database, MSigDB 3.0, with over 6700 gene sets, a complete revision of the collection of canonical pathways and experimental signatures from publications, enhanced annotations and upgrades to the web site. MSigDB is freely available for non-commercial use at http://www.broadinstitute.org/msigdb. Bioinformatics. 2011:27(12) \| 3693 Citations (from Europe PMC, 2025-03-29)

A description of the Molecular Signatures Database (MSigDB) Web site. [PMID: 24743996]

Liberzon A.

Annotated lists of genes help researchers to prioritize their own lists of candidate genes and to plan follow-up studies. The Molecular Signatures Database (MSigDB) is one of the most widely used knowledge base repositories of annotated sets of genes involved in biochemical pathways, signaling cascades, expression profiles from research publications, and other biological concepts. Here we provide an overview of MSigDB and its online analytical tools.

Methods Mol Biol. 2014:1150() | 160 Citations (from Europe PMC, 2025-03-29)

Molecular signatures database (MSigDB) 3.0. [PMID: 21546393]

Liberzon A, Subramanian A, Pinchback R, Thorvaldsdóttir H, Tamayo P, Mesirov JP.

Abstract

Well-annotated gene sets representing the universe of the biological processes are critical for meaningful and insightful interpretation of large-scale genomic data. The Molecular Signatures Database (MSigDB) is one of the most widely used repositories of such sets. We report the availability of a new version of the database, MSigDB 3.0, with over 6700 gene sets, a complete revision of the collection of canonical pathways and experimental signatures from publications, enhanced annotations and upgrades to the web site. MSigDB is freely available for non-commercial use at http://www.broadinstitute.org/msigdb.

Bioinformatics. 2011:27(12) | 3693 Citations (from Europe PMC, 2025-03-29)

URL:	http://www.broadinstitute.org/gsea/msigdb/index.jsp
Full name:	Molecular Signatures Database
Description:	The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software.The Molecular(MSigDB) is a collection of annotated gene sets for use with GSEA software.
Year founded:	2011
Last update:	2016-01-01
Version:	5.1
Accessibility:	Accessible
Country/Region:	United States

Data type:	DNA
Data object:	NA
Database category:	Gene genome and annotation
Major species:	NA
Keywords:	GSEA gene annotation

University/Institution:	Broad Institute
Address:	320 Charles Street, Cambridge, MA
City:	Cambridge
Province/State:	MA
Country/Region:	United States
Contact name (PI/Team):	Mesirov JP
Contact email (PI/Helpdesk):	gsea@broadinstitute.org

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a catalog of worldwide biological databases

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Database Commons a catalog of worldwide biological databases