| URL: | http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl |
| Full name: | |
| Description: | hmChIP is a database of genome-wide chromatin immu-noprecipitation (ChIP) data in human and mouse. |
| Year founded: | 2011 |
| Last update: | 2011-5-15 |
| Version: | v1.0 |
| Accessibility: |
Accessible
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| Country/Region: | United States |
| Data type: | |
| Data object: | |
| Database category: | |
| Major species: | |
| Keywords: |
| University/Institution: | Johns Hopkins University |
| Address: | Baltimore, MD 21205, USA |
| City: | Baltimore |
| Province/State: | Maryland |
| Country/Region: | United States |
| Contact name (PI/Team): | Li Chen |
| Contact email (PI/Helpdesk): | lichen1@jhsph.edu |
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hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. [PMID: 21450710]
hmChIP is a database of genome-wide chromatin immunoprecipitation (ChIP) data in human and mouse. Currently, the database contains 2016 samples from 492 ChIP-seq and ChIP-chip experiments, representing a total of 170 proteins and 11 069 914 protein-DNA interactions. A web server provides interface for database query. Protein-DNA binding intensities can be retrieved from individual samples for user-provided genomic regions. The retrieved intensities can be used to cluster samples and genomic regions to facilitate exploration of combinatorial patterns, cell-type dependencies, and cross-sample variability of protein-DNA interactions. http://jilab.biostat.jhsph.edu/database/cgi-bin/hmChIP.pl. |