| URL: | http://www.toulouse.inra.fr/prodom.html |
| Full name: | |
| Description: | ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. |
| Year founded: | 1998 |
| Last update: | 2005-01-01 |
| Version: | v1.0 |
| Accessibility: |
Unaccessible
|
| Country/Region: | France |
| Data type: | |
| Data object: |
NA
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| Database category: | |
| Major species: |
NA
|
| Keywords: |
| University/Institution: | French National Institute for Agricultural Research |
| Address: | BP 27, F-31326 Castanet-Tolosan Cedex, France |
| City: | Castanet-Tolosan |
| Province/State: | |
| Country/Region: | France |
| Contact name (PI/Team): | Daniel Kahn |
| Contact email (PI/Helpdesk): | Daniel.Kahn@toulouse.inra.fr |
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The ProDom database of protein domain families: more emphasis on 3D. [PMID: 15608179]
ProDom is a comprehensive database of protein domain families generated from the global comparison of all available protein sequences. Recent improvements include the use of three-dimensional (3D) information from the SCOP database; a completely redesigned web interface (http://www.toulouse.inra.fr/prodom.html); visualization of ProDom domains on 3D structures; coupling of ProDom analysis with the Geno3D homology modelling server; Bayesian inference of evolutionary scenarios for ProDom families. In addition, we have developed ProDom-SG, a ProDom-based server dedicated to the selection of candidate proteins for structural genomics. |
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The ProDom database of protein domain families. [PMID: 9399865]
The ProDom database contains protein domain families generated from the SWISS-PROT database by automated sequence comparisons. It can be searched on the World Wide Web (http://protein.toulouse.inra. fr/prodom.html ) or by E-mail (prodom@toulouse.inra.fr) to study domain arrangements within known families or new proteins. Strong emphasis has been put on the graphical user interface which allows for interactive analysis of protein homology relationships. Recent improvements to the server include: ProDom search by keyword; links to PROSITE and PDB entries; more sensitive ProDom similarity search with BLAST or WU-BLAST; alignments of query sequences with homologous ProDom domain families; and links to the SWISS-MODEL server (http: //www.expasy.ch/swissmod/SWISS-MODEL.html ) for homology based 3-D domain modelling where possible. |