Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

BodyParts3D

General information

URL: http://lifesciencedb.jp/ag/bp3d/
Full name:
Description: BodyParts3D is a dictionary-type database for anatomy in which anatomical concepts are represented by 3D structure data that specify corresponding segments of a 3D whole-body model for an adult human male.
Year founded: 2009
Last update:
Version: v1.0
Accessibility:
Accessible
Country/Region: Japan

Classification & Tag

Data type:
Data object:
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Major species:
Keywords:

Contact information

University/Institution: National Institute of Genetics
Address: Bunkyo-ku, Tokyo 113-0032, Japan
City: Tokyo
Province/State:
Country/Region: Japan
Contact name (PI/Team): Kousaku Okubo
Contact email (PI/Helpdesk): kokubo@genes.nig.ac.jp

Publications

18835852
BodyParts3D: 3D structure database for anatomical concepts. [PMID: 18835852]
Mitsuhashi N, Fujieda K, Tamura T, Kawamoto S, Takagi T, Okubo K.

BodyParts3D is a dictionary-type database for anatomy in which anatomical concepts are represented by 3D structure data that specify corresponding segments of a 3D whole-body model for an adult human male. It encompasses morphological and geometrical knowledge in anatomy and complements ontological representation. Moreover, BodyParts3D introduces a universal coordinate system in human anatomy, which may facilitate management of samples and data in biomedical research and clinical practice. As of today, 382 anatomical concepts, sufficient for mapping materials in most molecular medicine experiments, have been specified. Expansion of the dictionary by adding further segments and details to the whole-body model will continue in collaboration with clinical researchers until sufficient resolution and accuracy for most clinical application are achieved. BodyParts3D is accessible at: http://lifesciencedb.jp/ag/bp3d/.

Nucleic Acids Res. 2009:37(Database issue) | 95 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
2187/6895 (68.296%)
Structure:
308/967 (68.252%)
2187
Total Rank
91
Citations
5.688
z-index

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Record metadata

Created on: 2015-07-27
Curated by:
Lina Ma [2019-07-30]
Fatima Batool [2018-12-27]
Zhang Zhang [2016-04-26]
Mengwei Li [2016-03-31]
Mengwei Li [2015-11-29]