Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

Ebola-KB

General information

URL: http://ebola.semanticscience.org
Full name: Ebola virus-centered Knowledge Base
Description: Ebola-KB is an Ebola virus-centered knowledge base.
Year founded: 2015
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
Data object:
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Keywords:

Contact information

University/Institution: Stanford University
Address: Stanford Center for Biomedical Informatics Research, Department of Medicine, Stanford University, Stanford, CA, USA
City: Stanford
Province/State: CA
Country/Region: United States
Contact name (PI/Team): Michel Dumontier
Contact email (PI/Helpdesk): michel.dumontier@stanford.edu

Publications

26055098
An Ebola virus-centered knowledge base. [PMID: 26055098]
Kamdar MR, Dumontier M.

Ebola virus (EBOV), of the family Filoviridae viruses, is a NIAID category A, lethal human pathogen. It is responsible for causing Ebola virus disease (EVD) that is a severe hemorrhagic fever and has a cumulative death rate of 41% in the ongoing epidemic in West Africa. There is an ever-increasing need to consolidate and make available all the knowledge that we possess on EBOV, even if it is conflicting or incomplete. This would enable biomedical researchers to understand the molecular mechanisms underlying this disease and help develop tools for efficient diagnosis and effective treatment. In this article, we present our approach for the development of an Ebola virus-centered Knowledge Base (Ebola-KB) using Linked Data and Semantic Web Technologies. We retrieve and aggregate knowledge from several open data sources, web services and biomedical ontologies. This knowledge is transformed to RDF, linked to the Bio2RDF datasets and made available through a SPARQL 1.1 Endpoint. Ebola-KB can also be explored using an interactive Dashboard visualizing the different perspectives of this integrated knowledge. We showcase how different competency questions, asked by domain users researching the druggability of EBOV, can be formulated as SPARQL Queries or answered using the Ebola-KB Dashboard. © The Author(s) 2015. Published by Oxford University Press.

Database (Oxford). 2015:2015() | 8 Citations (from Europe PMC, 2026-04-11)

Ranking

All databases:
5592/6932 (19.345%)
Health and medicine:
1406/1755 (19.943%)
Literature:
467/577 (19.237%)
Structure:
778/972 (20.062%)
5592
Total Rank
8
Citations
0.727
z-index

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Record metadata

Created on: 2016-01-15
Curated by:
Zhang Zhang [2016-05-08]
Jian Sang [2016-04-04]