Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

GeneProf

General information

URL: http://www.geneprof.org/GeneProf/
Full name: GeneProf
Description: GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput sequencing platforms (RNA-seq and ChIP-seq; "Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data!
Year founded: 2012
Last update: 12/19/2014
Version: v2.0
Accessibility:
Accessible
Country/Region: United Kingdom

Classification & Tag

Data type:
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: University of Edinburgh
Address: SCRM Building,5 Little France Drive,Edinburgh EH16 4UU,UK
City: Edinburgh
Province/State:
Country/Region: United Kingdom
Contact name (PI/Team): Simon R. Tomlinson
Contact email (PI/Helpdesk): simon.tomlinson@ed.ac.uk

Publications

24174536
GeneProf data: a resource of curated, integrated and reusable high-throughput genomics experiments. [PMID: 24174536]
Halbritter F, Kousa AI, Tomlinson SR.

GeneProf Data (http://www.geneprof.org) is an open web resource for analysed functional genomics experiments. We have built up a large collection of completely processed RNA-seq and ChIP-seq studies by carefully and transparently reanalysing and annotating high-profile public data sets. GeneProf makes these data instantly accessible in an easily interpretable, searchable and reusable manner and thus opens up the path to the advantages and insights gained from genome-scale experiments to a broader scientific audience. Moreover, GeneProf supports programmatic access to these data via web services to further facilitate the reuse of experimental data across tools and laboratories.

Nucleic Acids Res. 2014:42(Database issue) | 16 Citations (from Europe PMC, 2026-06-06)
22205509
GeneProf: analysis of high-throughput sequencing experiments. [PMID: 22205509]
Halbritter F, Vaidya HJ, Tomlinson SR.
Nat Methods. 2012:9(1) | 68 Citations (from Europe PMC, 2026-06-06)

Ranking

All databases:
1984/6932 (71.394%)
Gene genome and annotation:
609/2040 (70.196%)
1984
Total Rank
83
Citations
5.929
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2015-06-20
Curated by:
Lin Liu [2022-08-16]
Nashaiman Pervaiz [2018-12-28]
Lina Ma [2018-06-12]
Lin Liu [2016-03-25]
Zhang Zhang [2015-12-20]
Jian Sang [2015-12-11]
Jian Sang [2015-12-05]
Jian Sang [2015-06-28]