| URL: | http://cluster.physics.iisc.ernet.in/cadb/ |
| Full name: | Conformational Angles DataBase |
| Description: | CADB-3.0 is used to visualize the conformational angles in varied regions (fully, generously, additionally and disallowed regions). In addition, options are provided to display the angles in the secondary structural elements (alpha-helix, beta-sheet and 3(10)-helix) of the Ramachandran plot. |
| Year founded: | 2005 |
| Last update: | 2017 |
| Version: | 2017 |
| Accessibility: |
Accessible
|
| Country/Region: | India |
| Data type: | |
| Data object: | |
| Database category: | |
| Major species: |
NA
|
| Keywords: |
| University/Institution: | Indian Institute of Science |
| Address: | |
| City: | Bangalore |
| Province/State: | Karnataka |
| Country/Region: | India |
| Contact name (PI/Team): | Professor K. Sekar |
| Contact email (PI/Helpdesk): | sekar@iisc.ac.in |
|
Conformational Angles DataBase (CADB-3.0). [PMID: 17897091]
Transitions in amino-acid conformation angles tend to accompany various structural modifications in protein structures. Thus, to benefit the modeling of protein structures, the Conformation Angles DataBase (CADB-3.0) has been updated to visualize the conformational angles in varied regions (fully, generously, additionally and disallowed regions). In addition, options are provided to display the angles in the secondary structural elements (alpha-helix, beta-sheet and 3(10)-helix) of the Ramachandran plot. The database is being updated periodically and can be accessed over the World Wide Web at the following URL: http://cluster.physics.iisc.ernet.in/cadb/. |
|
CADB-2.0: Conformation Angles Database. [PMID: 15858276]
The Conformation Angles Data Base (CADB) is a comprehensive, authoritative and timely knowledge base with a powerful query engine developed to facilitate the retrieval of information related to the conformational angles (main chain and side chain) of the amino-acid residues present in non-redundant (both 25 and 90%) data sets. The updated version has improved options for determining the dependency of the conformation angles of a particular residue upon the flanking residues, doublet analysis, triplet analysis and analysis of a particular protein structure. It is worth mentioning that for all options a user-friendly and convenient Java graphical user interface (GUI) has been provided to display the output on the client machine. The database is accessible at the URL http://cluster.physics.iisc.ernet.in/cadb/ or http://144.16.71.148/cadb/. |