Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

CADB-3.0

General information

URL: http://cluster.physics.iisc.ernet.in/cadb/
Full name: Conformational Angles DataBase
Description: CADB-3.0 is used to visualize the conformational angles in varied regions (fully, generously, additionally and disallowed regions). In addition, options are provided to display the angles in the secondary structural elements (alpha-helix, beta-sheet and 3(10)-helix) of the Ramachandran plot.
Year founded: 2005
Last update: 2017
Version: 2017
Accessibility:
Accessible
Country/Region: India

Classification & Tag

Data type:
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Indian Institute of Science
Address:
City: Bangalore
Province/State: Karnataka
Country/Region: India
Contact name (PI/Team): Professor K. Sekar
Contact email (PI/Helpdesk): sekar@iisc.ac.in

Publications

17897091
Conformational Angles DataBase (CADB-3.0). [PMID: 17897091]
Gopalakrishnan K, Sheik SS, Ranjani CV, Udayakumar A, Sekar K.

Transitions in amino-acid conformation angles tend to accompany various structural modifications in protein structures. Thus, to benefit the modeling of protein structures, the Conformation Angles DataBase (CADB-3.0) has been updated to visualize the conformational angles in varied regions (fully, generously, additionally and disallowed regions). In addition, options are provided to display the angles in the secondary structural elements (alpha-helix, beta-sheet and 3(10)-helix) of the Ramachandran plot. The database is being updated periodically and can be accessed over the World Wide Web at the following URL: http://cluster.physics.iisc.ernet.in/cadb/.

Protein Pept Lett. 2007:14(7) | 3 Citations (from Europe PMC, 2026-04-04)
15858276
CADB-2.0: Conformation Angles Database. [PMID: 15858276]
Samaya Mohan K, Sheik SS, Ramesh J, Balamurugan B, Jeyasimhan M, Mayilarasi C, Sekar K.

The Conformation Angles Data Base (CADB) is a comprehensive, authoritative and timely knowledge base with a powerful query engine developed to facilitate the retrieval of information related to the conformational angles (main chain and side chain) of the amino-acid residues present in non-redundant (both 25 and 90%) data sets. The updated version has improved options for determining the dependency of the conformation angles of a particular residue upon the flanking residues, doublet analysis, triplet analysis and analysis of a particular protein structure. It is worth mentioning that for all options a user-friendly and convenient Java graphical user interface (GUI) has been provided to display the output on the client machine. The database is accessible at the URL http://cluster.physics.iisc.ernet.in/cadb/ or http://144.16.71.148/cadb/.

Acta Crystallogr D Biol Crystallogr. 2005:61(Pt 5) | 0 Citations (from Europe PMC, 2026-04-04)

Ranking

All databases:
6748/6932 (2.669%)
Structure:
943/972 (3.086%)
6748
Total Rank
3
Citations
0.143
z-index

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Record metadata

Created on: 2018-01-26
Curated by:
[2018-11-28]
Mengyu Pan [2018-09-20]
Tongkun Guo [2018-03-22]
Tongkun Guo [2018-02-24]
Dong Zou [2018-02-13]