| URL: | http://sbrg2.gist.ac.kr/hcnet |
| Full name: | a database of heart and calcium functional network |
| Description: | The Heart and Calcium functional Network (HCNet) database is a collection of functional gene modules calculated from the microarray data compendium available from the GEO database. |
| Year founded: | 2006 |
| Last update: | |
| Version: | |
| Accessibility: |
Unaccessible
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| Country/Region: | Korea, Republic of |
| Data type: | |
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| University/Institution: | Gwangju Institute of Science and Technology |
| Address: | Department of Life Science, Gwangju Institute of Science and Technology 1 Oryong-dong, Buk-gu, Gwangju 500-712, Korea. |
| City: | Gwangju |
| Province/State: | |
| Country/Region: | Korea, Republic of |
| Contact name (PI/Team): | Do Han Kim |
| Contact email (PI/Helpdesk): | dhkim@gist.ac.kr |
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HCNet: a database of heart and calcium functional network. [PMID: 16787974]
SUMMARY: The Heart and Calcium functional Network (HCNet) database is a collection of functional gene modules calculated from the microarray data compendium available from the GEO database. It is a specialized database designed to assist experimentalists for cardiac calcium signaling research by providing the pre-calculated gene clusters and their potential correlation network in heart. In the current release of HCNet, 57 functional modules from 786 target genes obtained by a bi-clustering analysis of 381 microarray datasets are available. Detailed information of the clusters such as expression profiles, network diagrams is provided in two categories, heart-specific genes and heart-specific genes along with calcium toolkit genes. Overrepresented gene ontological categories and transcription factors in each cluster are also provided to infer the biological implications of the detected functional modules. |