Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

ProgeniDB

General information

URL: http://biodiversity.cs.cf.ac.uk/cymart/progenidb
Full name:
Description: ProgeniDB is a web-accessible cell lineage database, which comprises data derived from time-lapse microscopy image sequences, using our novel encoding software tool called ProgeniTRAK.
Year founded: 2007
Last update:
Version:
Accessibility:
Accessible
Country/Region: United Kingdom

Classification & Tag

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Contact information

University/Institution: Cardiff University
Address:
City:
Province/State:
Country/Region: United Kingdom
Contact name (PI/Team): Khan IA
Contact email (PI/Helpdesk): wpciak@cf.ac.uk

Publications

17387278
ProgeniDB: a novel cell lineage database for generation associated phenotypic behavior in cell-based assays. [PMID: 17387278]
Khan IA, Husemann P, Campbell L, White NS, White RJ, Smith PJ, Errington RJ.

ProgeniDB is a web-accessible cell lineage database, which comprises data derived from time-lapse microscopy image sequences, using our novel encoding software tool called ProgeniTRAK. This database provides information on qualitative and quantitative changes in cellular dynamics in response to anti-cancer drugs variation, which is critical for pharmacodynamic modeling and validation. The lineage data for each progenitor cell centers around the construction of a bifurcation map, locating in both space and time critical cellular events such as cell division and cell death. This database provides the opportunity to select a set of lineages based on different experimental constraints and observe the associated phenotypic behavior of progenitor cells. The output generated from this database depicts the cellular dynamic of selected population which can be downloaded to explore and exploit in relation to hypothesis-driven drug discovery. A case study is presented where we interrogate drug-induced perturbations on ensuing cell lineages. The database is available at http://biodiversity.cs.cf.ac.uk/cymart/progenidb.html.

Cell Cycle. 2007:6(7) | 7 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
6318/6895 (8.383%)
Health and medicine:
1602/1738 (7.883%)
6318
Total Rank
7
Citations
0.389
z-index

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Record metadata

Created on: 2018-01-27
Curated by:
Tongkun Guo [2018-03-28]
Tongkun Guo [2018-02-25]