Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

dbEM

General information

URL: http://crdd.osdd.net/raghava/dbem
Full name: Database of epigenetic modifiers
Description: dbEM is a database of epigenetic modifiers curated from cancerous and normal genomes. It is created to study role of epigenetic proteins in oncogenesis and cancer drug resistance. This database maintain genomic information about each epigenetic modifier like mutations, copy number variation and gene expression in thousand of tumor samples, cancer cell lines and healthy individuals; obtained from COSMIC, CCLE and human thousand-genome project.
Year founded: 2016
Last update:
Version:
Accessibility:
Accessible
Country/Region: India

Classification & Tag

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Contact information

University/Institution: Institute of Microbial Technology
Address: Sector 39-A, Chandigarh-160036, India
City: Chandigarh
Province/State:
Country/Region: India
Contact name (PI/Team): Gajendra P. S. Raghava
Contact email (PI/Helpdesk): raghava@iiitd.ac.in

Publications

26777304
dbEM: A database of epigenetic modifiers curated from cancerous and normal genomes. [PMID: 26777304]
Singh Nanda J, Kumar R, Raghava GP.

We have developed a database called dbEM (database of Epigenetic Modifiers) to maintain the genomic information of about 167 epigenetic modifiers/proteins, which are considered as potential cancer targets. In dbEM, modifiers are classified on functional basis and comprise of 48 histone methyl transferases, 33 chromatin remodelers and 31 histone demethylases. dbEM maintains the genomic information like mutations, copy number variation and gene expression in thousands of tumor samples, cancer cell lines and healthy samples. This information is obtained from public resources viz. COSMIC, CCLE and 1000-genome project. Gene essentiality data retrieved from COLT database further highlights the importance of various epigenetic proteins for cancer survival. We have also reported the sequence profiles, tertiary structures and post-translational modifications of these epigenetic proteins in cancer. It also contains information of 54 drug molecules against different epigenetic proteins. A wide range of tools have been integrated in dbEM e.g. Search, BLAST, Alignment and Profile based prediction. In our analysis, we found that epigenetic proteins DNMT3A, HDAC2, KDM6A, and TET2 are highly mutated in variety of cancers. We are confident that dbEM will be very useful in cancer research particularly in the field of epigenetic proteins based cancer therapeutics. This database is available for public at URL: http://crdd.osdd.net/raghava/dbem.

Sci Rep. 2016:6() | 46 Citations (from Europe PMC, 2026-04-04)

Ranking

All databases:
2415/6932 (65.176%)
Gene genome and annotation:
753/2039 (63.119%)
Expression:
488/1361 (64.217%)
Modification:
139/338 (59.172%)
2415
Total Rank
44
Citations
4.4
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Record metadata

Created on: 2018-01-27
Curated by:
Lina Ma [2018-11-29]
[2018-11-29]
Farah Nazir [2018-04-07]