Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

IGDD

General information

URL: http://bio.njfu.edu.cn/igdd
Full name: Intronless Genes Database in Dicots
Description: IGDD provides a comprehensive and up-to-date platform for researchers to assist the exploration of intronless genes in dicot plants. IGDD displays the structural and functional annotations, the homolog groups, the syntenic relationships, the expression patterns, and the statistical characteristics of intronless genes. In addition, useful tools such as an advanced search and local BLAST are available through a user-friendly and intuitive web interface.
Year founded: 2016
Last update:
Version:
Accessibility:
Unaccessible
Country/Region: China

Contact information

University/Institution: Nanjing Forestry University
Address: Key Laboratory of Forest Genetics & Biotechnology, Nanjing Forestry University, Nanjing, China
City: Nanjing
Province/State: Jiangsu
Country/Region: China
Contact name (PI/Team): Tongming Yin
Contact email (PI/Helpdesk): tmyin@njfu.com.cn

Publications

27465544
IGDD: a database of intronless genes in dicots. [PMID: 27465544]
Yan H, Dai X, Feng K, Ma Q, Yin T.

BACKGROUND: Intronless genes are a significant characteristic of prokaryotes. Systematic identification and annotation are primary and crucial steps for determining the functions of intronless genes and understanding their occurrence in eukaryotes.
DESCRIPTION: In this paper, we describe the construction of the Intronless Genes Database in Dicots (IGDD; available at http://bio.njfu.edu.cn/igdd/ ), which contains data for five well-annotated plants including Arabidopsis thaliana, Carica papaya, Populus trichocarpa, Salix suchowensis and Vitis vinifera. Using highly visual settings, IGDD displays the structural and functional annotations, the homolog groups, the syntenic relationships, the expression patterns, and the statistical characteristics of intronless genes. In addition, useful tools such as an advanced search and local BLAST are available through a user-friendly and intuitive web interface.
CONCLUSION: In conclusion, the IGDD provides a comprehensive and up-to-date platform for researchers to assist the exploration of intronless genes in dicot plants.

BMC Bioinformatics. 2016:17() | 12 Citations (from Europe PMC, 2025-12-20)

Ranking

All databases:
4469/6895 (35.199%)
Gene genome and annotation:
1444/2021 (28.6%)
Expression:
981/1347 (27.246%)
Structure:
664/967 (31.437%)
Metadata:
490/719 (31.989%)
4469
Total Rank
12
Citations
1.333
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Record metadata

Created on: 2018-01-28
Curated by:
huma shireen [2018-09-03]
Farah Nazir [2018-04-12]
Farah Nazir [2018-04-10]