Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

HopBase

General information

URL: http://hopbase.org;;http://hopbase.cgrb.oregonstate.edu
Full name: HopBase: a unified genomic database for hop (Humulus lupulus)
Description: a unified genomic database for hop (Humulus lupulus)
Year founded: 2017
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Oregon State University
Address: David Hendrix Electrical Engineering and Computer Science, Oregon State University Biochemistry and Biophysics, Oregon State University, OR, USA Tel: 541-908-5057; 541-737-0481
City:
Province/State:
Country/Region: United States
Contact name (PI/Team): David Hendrix
Contact email (PI/Helpdesk): david.hendrix@oregonstate.edu

Publications

28415075
HopBase: a unified resource for Humulus genomics. [PMID: 28415075]
Hill ST, Sudarsanam R, Henning J, Hendrix D.

Hop (Humulus lupulus L. var lupulus) is a dioecious plant of worldwide significance, used primarily for bittering and flavoring in brewing beer. Studies on the medicinal properties of several unique compounds produced by hop have led to additional interest from pharmacy and healthcare industries as well as livestock production as a natural antibiotic. Genomic research in hop has resulted a published draft genome and transcriptome assemblies. As research into the genomics of hop has gained interest, there is a critical need for centralized online genomic resources. To support the growing research community, we report the development of an online resource "HopBase.org." In addition to providing a gene annotation to the existing Shinsuwase draft genome, HopBase makes available genome assemblies and annotations for both the cultivar "Teamaker" and male hop accession number USDA 21422M. These genome assemblies, gene annotations, along with other common data, coupled with a genome browser and BLAST database enable the hop community to enter the genomic age. The HopBase genomic resource is accessible at http://hopbase.org and http://hopbase.cgrb.oregonstate.edu.

Database (Oxford). 2017:2017(1) | 20 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
3758/6895 (45.511%)
Gene genome and annotation:
1157/2021 (42.801%)
3758
Total Rank
19
Citations
2.375
z-index

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Record metadata

Created on: 2018-01-28
Curated by:
huma shireen [2018-04-16]
Zhaohua Li [2018-01-28]