Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

PharmDB-K

General information

URL: http://pharmdb-k.org
Full name: Integrated Bio-Pharmacological Network Database for Traditional Korean Medicine
Description: PharmDB-K is publicly available, integrated bio-pharmacological Traditional Korean Medicine (TKM) database for researchers in drug discovery, which offers comprehensive information relating to TKM-associated drugs (compound), disease indication, and protein relationships.
Year founded: 2015
Last update:
Version:
Accessibility:
Accessible
Country/Region: Korea, Republic of

Classification & Tag

Data type:
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Seoul National University
Address: Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 151–742, Republic of Korea
City: Seoul
Province/State:
Country/Region: Korea, Republic of
Contact name (PI/Team): Byung Woo Han
Contact email (PI/Helpdesk): bwhan@snu.ac.kr

Publications

26555441
PharmDB-K: Integrated Bio-Pharmacological Network Database for Traditional Korean Medicine. [PMID: 26555441]
Lee JH, Park KM, Han DJ, Bang NY, Kim DH, Na H, Lim S, Kim TB, Kim DG, Kim HJ, Chung Y, Sung SH, Surh YJ, Kim S, Han BW.

Despite the growing attention given to Traditional Medicine (TM) worldwide, there is no well-known, publicly available, integrated bio-pharmacological Traditional Korean Medicine (TKM) database for researchers in drug discovery. In this study, we have constructed PharmDB-K, which offers comprehensive information relating to TKM-associated drugs (compound), disease indication, and protein relationships. To explore the underlying molecular interaction of TKM, we integrated fourteen different databases, six Pharmacopoeias, and literature, and established a massive bio-pharmacological network for TKM and experimentally validated some cases predicted from the PharmDB-K analyses. Currently, PharmDB-K contains information about 262 TKMs, 7,815 drugs, 3,721 diseases, 32,373 proteins, and 1,887 side effects. One of the unique sets of information in PharmDB-K includes 400 indicator compounds used for standardization of herbal medicine. Furthermore, we are operating PharmDB-K via phExplorer (a network visualization software) and BioMart (a data federation framework) for convenient search and analysis of the TKM network. Database URL: http://pharmdb-k.org, http://biomart.i-pharm.org.

PLoS One. 2015:10(11) | 11 Citations (from Europe PMC, 2025-12-13)

Ranking

All databases:
5074/6895 (26.425%)
Interaction:
928/1194 (22.362%)
Health and medicine:
1268/1738 (27.1%)
Literature:
433/577 (25.13%)
Metadata:
513/719 (28.79%)
5074
Total Rank
11
Citations
1.1
z-index

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Record metadata

Created on: 2018-01-28
Curated by:
Sidra Younas [2018-04-13]