| URL: | http://tropgenedb.cirad.fr/tropgene/JSP/index.jsp |
| Full name: | tropical gene database |
| Description: | TropGeneDB is a database that manages genomic,genetic and phenotypic information about tropical crops. |
| Year founded: | 2004 |
| Last update: | 2016-02-01 |
| Version: | v1.0 |
| Accessibility: |
Accessible
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| Country/Region: | France |
| Data type: | |
| Data object: |
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| Database category: | |
| Major species: | |
| Keywords: |
| University/Institution: | Agricultural Research for Development |
| Address: | CIRAD,UMR AGAP,F-34398 Montpellier,France |
| City: | Montpellier |
| Province/State: | |
| Country/Region: | France |
| Contact name (PI/Team): | Chantal Hamelin |
| Contact email (PI/Helpdesk): | chantal.hamelin@cirad.fr |
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Using TropGeneDB: A Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops. [PMID: 27987169]
TropGeneDB ( http://tropgenedb.cirad.fr ) is a web database that manages genomic, genetic, and phenotypic information on tropical crops. It is organized on a crop basis with currently nine public modules: banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, and sugarcane. TropGeneDB contains data on molecular markers, quantitative trait loci (QTLs), genetic and physical maps, genotyping and phenotyping studies, and information on genetic resources (geographic origin, parentage, collection). Crop-specific web interfaces have been designed to allow quick consultations as well as personalized complex queries. |
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TropGeneDB, the multi-tropical crop information system updated and extended. [PMID: 23161680]
TropGeneDB (http://tropgenedb.cirad.fr) was created to store genetic, molecular and phenotypic data on tropical crop species. The most common data stored in TropGeneDB are molecular markers, quantitative trait loci, genetic and physical maps, genetic diversity, phenotypic diversity studies and information on genetic resources (geographic origin, parentage, collection). TropGeneDB is organized on a crop basis with currently nine public modules (banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, sugarcane). Crop-specific Web consultation interfaces have been designed to allow quick consultations and personalized complex queries. TropGeneDB is a component of the South Green Bioinformatics Platform (http://southgreen.cirad.fr/). |
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TropGENE-DB, a multi-tropical crop information system. [PMID: 14681435]
TropGENE-DB, is a crop information system created to store genetic, molecular and phenotypic data of the numerous yet poorly documented tropical crop species. The most common data stored in TropGENE-DB are information on genetic resources (agro-morphological data, parentages, allelic diversity), molecular markers, genetic maps, results of quantitative trait loci analyses, data from physical mapping, sequences, genes, as well as the corresponding references. TropGENE-DB is organized on a crop basis with currently three running modules (sugarcane, cocoa and banana), with plans to create additional modules for rice, cotton, oil palm, coconut, rubber tree, pineapple, taro, yam and sorghum. The TropGENE-DB information system is accessible for consultation via the internet at http://tropgenedb.cirad.fr. Specific web consultation interfaces have been designed to allow quick consultations as well as complex queries. |