Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

SLDB

General information

URL: http://neurospeech.org/sldb
Full name: speech/Language disorder database
Description: Click column headers to sort. Click any row to view curated gene association records related to that gene. Click Entrez ID for gene information, or ABA for gene expression profiles from the Allen Brain Atlas.
Year founded: 2014
Last update:
Version:
Accessibility:
Accessible
Country/Region: United States

Classification & Tag

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Contact information

University/Institution: Boston University
Address: Departments of Health Sciences and Speech, Language, and Hearing Sciences, Boston University, Boston, USA
City:
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Country/Region: United States
Contact name (PI/Team): Jason W. Bohland
Contact email (PI/Helpdesk): jbohland@bu.edu

Publications

23949335
An informatics approach to integrating genetic and neurological data in speech and language neuroscience. [PMID: 23949335]
Bohland JW, Myers EM, Kim E.

A number of heritable disorders impair the normal development of speech and language processes and occur in large numbers within the general population. While candidate genes and loci have been identified, the gap between genotype and phenotype is vast, limiting current understanding of the biology of normal and disordered processes. This gap exists not only in our scientific knowledge, but also in our research communities, where genetics researchers and speech, language, and cognitive scientists tend to operate independently. Here we describe a web-based, domain-specific, curated database that represents information about genotype-phenotype relations specific to speech and language disorders, as well as neuroimaging results demonstrating focal brain differences in relevant patients versus controls. Bringing these two distinct data types into a common database ( http://neurospeech.org/sldb ) is a first step toward bringing molecular level information into cognitive and computational theories of speech and language function. One bridge between these data types is provided by densely sampled profiles of gene expression in the brain, such as those provided by the Allen Brain Atlases. Here we present results from exploratory analyses of human brain gene expression profiles for genes implicated in speech and language disorders, which are annotated in our database. We then discuss how such datasets can be useful in the development of computational models that bridge levels of analysis, necessary to provide a mechanistic understanding of heritable language disorders. We further describe our general approach to information integration, discuss important caveats and considerations, and offer a specific but speculative example based on genes implicated in stuttering and basal ganglia function in speech motor control.

Neuroinformatics. 2014:12(1) | 6 Citations (from Europe PMC, 2026-04-04)

Ranking

All databases:
5979/6932 (13.762%)
Expression:
1201/1361 (11.83%)
Literature:
499/577 (13.692%)
5979
Total Rank
6
Citations
0.5
z-index

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Record metadata

Created on: 2018-01-28
Curated by:
Mansoor Khan [2018-04-25]
Mansoor Khan [2018-04-04]
Qi Wang [2018-01-28]