Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

SNP2NMD

General information

URL: http://variome.net
Full name:
Description: We developed the SNP2NMD database for human SNPs (single nucleotide polymorphisms) that result in PTCs (premature termination codons) and trigger nonsense-mediated mRNA decay (NMD). The SNP2NMD Web interfaces provide extensive genetic information on and graphical views of the queried SNP, gene, and disease terms.
Year founded: 2007
Last update:
Version:
Accessibility:
Accessible
Country/Region: Korea, Republic of

Classification & Tag

Data type:
DNA
Data object:
Database category:
Major species:
Keywords:

Contact information

University/Institution: Korean Bioinformation Center
Address:
City:
Province/State:
Country/Region: Korea, Republic of
Contact name (PI/Team): Seong-Min Park
Contact email (PI/Helpdesk): lastmhc@kribb.re.kr

Publications

17121775
SNP2NMD: a database of human single nucleotide polymorphisms causing nonsense-mediated mRNA decay. [PMID: 17121775]
Han A, Kim WY, Park SM.

Elucidating the effects of genetic polymorphisms on genes and gene networks is an important step in disease association studies. We developed the SNP2NMD database for human SNPs (single nucleotide polymorphisms) that result in PTCs (premature termination codons) and trigger nonsense-mediated mRNA decay (NMD). The SNP2NMD Web interfaces provide extensive genetic information on and graphical views of the queried SNP, gene, and disease terms.
AVAILABILITY: SNP2NMD is available from http://variome.net, or directly from http://bioportal.kobic.re.kr/SNP2NMD.
SUPPLEMENTARY INFORMATION: http://bioportal.kobic.re.kr/SNP2NMD/Wiki.jsp?page=Statistics.

Bioinformatics. 2007:23(3) | 9 Citations (from Europe PMC, 2026-04-04)

Ranking

All databases:
6149/6932 (11.31%)
Genotype phenotype and variation:
907/1012 (10.474%)
6149
Total Rank
9
Citations
0.474
z-index

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Record metadata

Created on: 2018-01-28
Curated by:
Tongkun Guo [2018-04-02]